| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra005581 |
| Family | GH14 |
| Protein Properties | Length: 582 Molecular Weight: 66533.2 Isoelectric Point: 5.9034 |
| Chromosome | Chromosome/Scaffold: 05 Start: 6338856 End: 6341224 |
| Description | beta-amylase 6 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 85 | 503 | 0 |
| YVMLQLGVITNDNVLENAEKLTKQLKKLKQSQVDGVMVDVWWGIVESNGPKQYQWSAYRNLFEIVQSCGLKLQAIMSFHRCGGNIGDDVNIPLPKWVLEI GETNPDIFYTNKSGNRNEECLSLSVDNLSLFSGRTAVEMYRDYMKSFRENMEDFISSGVIIDIEVGLGPAGELRYPSYSETQGWIFPGIGEFQCYDKYLR SDYEEEVTRVGHPEWNLPENAGKYNDVPEATGFFEDSSGTYLVEEGRFFLSWYARKLILHGDQILDEANKVFLGCKLKLAAKVSGIHWWYKTESHAAELT AGYYNLKNRDGYAAIAKMMRRHHAILNFTCLEMRNTEQPAKAKSGPQELVQQVLSCGWREGIEVAGENALPRFDRDGYNQVILNARPNGINRDGKPRMFG FTYLRLSDRLLSEPNFTTF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 582 Download |
| MTTVLRMMSP NLINGRNLYK GSQILVRGEE SKSRSHWRFS TKVSSRTPQA TASSGVSSTT 60 TEPKGREFNT TTYDDKMLAN YVPVYVMLQL GVITNDNVLE NAEKLTKQLK KLKQSQVDGV 120 MVDVWWGIVE SNGPKQYQWS AYRNLFEIVQ SCGLKLQAIM SFHRCGGNIG DDVNIPLPKW 180 VLEIGETNPD IFYTNKSGNR NEECLSLSVD NLSLFSGRTA VEMYRDYMKS FRENMEDFIS 240 SGVIIDIEVG LGPAGELRYP SYSETQGWIF PGIGEFQCYD KYLRSDYEEE VTRVGHPEWN 300 LPENAGKYND VPEATGFFED SSGTYLVEEG RFFLSWYARK LILHGDQILD EANKVFLGCK 360 LKLAAKVSGI HWWYKTESHA AELTAGYYNL KNRDGYAAIA KMMRRHHAIL NFTCLEMRNT 420 EQPAKAKSGP QELVQQVLSC GWREGIEVAG ENALPRFDRD GYNQVILNAR PNGINRDGKP 480 RMFGFTYLRL SDRLLSEPNF TTFKTFVKRM HANQEYCSEP ERYNHELLPL ERSINDESFE 540 KLMEETDPVD PLPWLEETDM SIRPFESVLS LLKSTFFRNK S* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02705 | PLN02705 | 2.0e-140 | 81 | 511 | 434 | + beta-amylase | ||
| PLN00197 | PLN00197 | 2.0e-152 | 82 | 543 | 469 | + beta-amylase; Provisional | ||
| PLN02905 | PLN02905 | 3.0e-165 | 81 | 511 | 435 | + beta-amylase | ||
| PLN02803 | PLN02803 | 7.0e-172 | 82 | 510 | 432 | + beta-amylase | ||
| PLN02801 | PLN02801 | 0 | 67 | 577 | 518 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC69949.1 | 0 | 77 | 581 | 1 | 505 | putative beta-amylase [Arabidopsis thaliana] |
| GenBank | AAY40266.1 | 0 | 71 | 562 | 2 | 494 | beta-amylase [Glycine max] |
| GenBank | AAZ38831.1 | 0 | 71 | 562 | 2 | 494 | beta-amylase [Glycine max] |
| DDBJ | BAA09462.1 | 0 | 71 | 562 | 2 | 494 | beta-amylase [Glycine max] |
| RefSeq | NP_180788.2 | 0 | 1 | 581 | 1 | 577 | BAM6 (BETA-AMYLASE 6); beta-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1uko_D | 0 | 71 | 562 | 1 | 493 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_C | 0 | 71 | 562 | 1 | 493 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_B | 0 | 71 | 562 | 1 | 493 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_A | 0 | 71 | 562 | 1 | 493 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_D | 0 | 71 | 562 | 1 | 493 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777976 | 448 | 117 | 562 | 0 |
| HO803971 | 398 | 160 | 555 | 0 |
| HO782669 | 389 | 177 | 563 | 0 |
| EX059322 | 250 | 1 | 250 | 0 |
| EL456360 | 291 | 149 | 439 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
