| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra005662 |
| Family | GH5 |
| Protein Properties | Length: 635 Molecular Weight: 72323.6 Isoelectric Point: 7.993 |
| Chromosome | Chromosome/Scaffold: 03 Start: 38301 End: 41720 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 243 | 578 | 7.5e-35 |
| NGQPFYVNGFNTYWMMTLAADNSTRGKVTDVFQQASAVGLTVGRTWAFNDGQWRALQKSPSVYDEDVFKALDFVVSEARKYKIRLILSLVNNWNDYGGKA QYVKWGNASGLNLTSDDDFFTNPTLRDFYKSHVRTVLNRVNTFTNITYKNDPTIFAWELMNEPRCPSDPSGDKLQSWIQEMAVFVKSLDAKHMVEIGLEG FYGPSAPARTKFNPNPYAAQVGTDFIRNNQALGVDFASVHVYPDAWISPAVSDTFLEFTNSWMQAHVEDAEMYLGMPVLFTEFGVSAHDPGFNTSFRDMM LNTVYKMSLNSTRKGGAGAGSLVWQVFPQGAEFMDD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 635 Download |
| MDLQQELEQE ACWKLELDKV TKLDPSKKKK KKKKRPFIRE DATYDSEPDY GYAELLSRVF 60 DMLREEEVST ERPRTVMMRR PQLLAQGTHI TVCLDFAHLC TMMHRKPGHV ITFLLGQMET 120 KGWLNKQHQL EMKGLVSSQH FQAVFQRYID AFVICSCCKS SDTALAEANG ISTLSCEMMN 180 MKLPPRRYTC KKMKDRLGFR FVLCSAVFMI LTQHRALANS HGVNSEEEEW EMVQRKGQQF 240 TLNGQPFYVN GFNTYWMMTL AADNSTRGKV TDVFQQASAV GLTVGRTWAF NDGQWRALQK 300 SPSVYDEDVF KALDFVVSEA RKYKIRLILS LVNNWNDYGG KAQYVKWGNA SGLNLTSDDD 360 FFTNPTLRDF YKSHVRTVLN RVNTFTNITY KNDPTIFAWE LMNEPRCPSD PSGDKLQSWI 420 QEMAVFVKSL DAKHMVEIGL EGFYGPSAPA RTKFNPNPYA AQVGTDFIRN NQALGVDFAS 480 VHVYPDAWIS PAVSDTFLEF TNSWMQAHVE DAEMYLGMPV LFTEFGVSAH DPGFNTSFRD 540 MMLNTVYKMS LNSTRKGGAG AGSLVWQVFP QGAEFMDDGY AVYLTRAHTA SKIISLQSKR 600 LAIFNSLCGW RCKWGCKKKN HTALDALLSH DDEL* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK12336 | PRK12336 | 1.0e-13 | 50 | 177 | 128 | + translation initiation factor IF-2 subunit beta; Provisional | ||
| pfam01873 | eIF-5_eIF-2B | 2.0e-15 | 58 | 177 | 120 | + Domain found in IF2B/IF5. This family includes the N terminus of eIF-5, and the C terminus of eIF-2 beta. This region corresponds to the whole of the archaebacterial eIF-2 beta homologue. The region contains a putative zinc binding C4 finger. | ||
| COG1601 | GCD7 | 8.0e-17 | 46 | 177 | 133 | + Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis] | ||
| COG3934 | COG3934 | 3.0e-24 | 235 | 593 | 369 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
| smart00653 | eIF2B_5 | 1.0e-27 | 72 | 177 | 106 | + domain present in translation initiation factor eIF2B and eIF5. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003743 | translation initiation factor activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006413 | translational initiation |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI18019.1 | 0 | 196 | 632 | 7 | 470 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_195813.1 | 0 | 193 | 632 | 1 | 447 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002273389.1 | 0 | 227 | 632 | 6 | 409 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002323680.1 | 0 | 226 | 632 | 11 | 413 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528703.1 | 0 | 210 | 634 | 49 | 473 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 232 | 602 | 6 | 370 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 0 | 242 | 580 | 22 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 0 | 242 | 580 | 22 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 0 | 242 | 580 | 22 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 0 | 242 | 580 | 22 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CF652410 | 275 | 329 | 603 | 0 |
| EX040273 | 276 | 360 | 635 | 0 |
| JK987915 | 295 | 226 | 520 | 0 |
| DT747977 | 293 | 232 | 524 | 0 |
| EL450176 | 267 | 245 | 511 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
