CAZyme Information

Basic Information
SpeciesBrassica rapa
Cazyme IDBra005694
FamilyGT4
Protein PropertiesLength: 526 Molecular Weight: 57736.3 Isoelectric Point: 8.1212
ChromosomeChromosome/Scaffold: 03 Start: 157214 End: 160057
Descriptionsulfoquinovosyldiacylglycerol 2
View CDS
External Links
NCBI Taxonomy
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GT43194667.5e-40
  EPEKPLVIHVGRIGVEKSLELLKSVMDKLPEARIAFIGDGPYREDLEKLFAGMPAVFTGMLQGEELSQAYASGDVFVMPSESETLGLVVLEAMASGLPVV
  AARAGGIPDIIPEEQEGKTGFLFNPGDVEDCVTKLRTLLHDKETREII
Full Sequence
Protein Sequence     Length: 526     Download
MNLSSSSLSI NLSPTHHPFL PSTTTNTNTC SSSSSATTCS PRCSFVSSPV SLGASCPRRS    60
SPVSLIRRKS QSFFAGLEVV SASSSGSSGM TITEARGEGD ESEIEAPLLD PESYSKPRRI    120
ALFVEPSPFA YVSGYKNRFQ NFIRYLREMG DEVIVVTTHE GVPEEFYGAK VIGSRSFPCP    180
YYQKVPLSLA LSPRIISEIA RFKPDIIHAS SPGIMVFGAL AIAKMLSVPI VMSYHTHVPV    240
YIPRYTFSWL VQPMWSIIRF LHRAADLTLV PSAAIGKDLI AAGATAANQL RLWNKGVDSE    300
SFNPRFRSQE MRIRLSNGEP EKPLVIHVGR IGVEKSLELL KSVMDKLPEA RIAFIGDGPY    360
REDLEKLFAG MPAVFTGMLQ GEELSQAYAS GDVFVMPSES ETLGLVVLEA MASGLPVVAA    420
RAGGIPDIIP EEQEGKTGFL FNPGDVEDCV TKLRTLLHDK ETREIIGKAA REETEKYDWR    480
AATTKIRNEQ YGAAIWFWRK KKAQVLGPIN WLVKRLFPVP PEVNA* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd03798GT1_wlbH_like7.0e-52120481381+
cd03801GT1_YqgM_like1.0e-71119487379+
TIGR00032argG5.0e-73119478372+
TIGR00009L283.0e-129119482367+
PLN02871PLN02871060522463+
Gene Ontology
GO TermDescription
GO:0009058biosynthetic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankAAK76635.10905201430unknown protein [Arabidopsis thaliana]
EMBLCAB69850.104152034466putative protein [Arabidopsis thaliana]
RefSeqNP_568085.204152034506SQD2 (sulfoquinovosyldiacylglycerol 2); UDP-glycosyltransferase/ UDP-sulfoquinovose:DAG sulfoquinovosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana]
RefSeqXP_002309122.10875201432predicted protein [Populus trichocarpa]
RefSeqXP_002323560.10965203427predicted protein [Populus trichocarpa]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3c4v_B0.000000000000002265495165406A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
PDB3c4v_A0.000000000000002265495165406A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
PDB3c4q_B0.000000000000002265495165406A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The First Step In Mycothiol Biosynthesis. Organism : Corynebacterium Glutamicum- Complex With Udp
PDB3c4q_A0.000000000000002265495165406A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The First Step In Mycothiol Biosynthesis. Organism : Corynebacterium Glutamicum- Complex With Udp
PDB3c48_B0.000000000000002265495185426A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure.
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
EG4737152992115090
HO8131183191674850
DV7116653011974970
EX107841281413210
CO0887192901003880
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_004_00305.1Aquca_053_00022.3Aquca_053_00022.2Aquca_053_00022.1
Arabidopsis lyrata860579323188
Arabidopsis thalianaAT5G01220.1AT3G45100.2AT3G45100.1
Brachypodium distachyonBradi1g59860.1Bradi2g02800.1Bradi1g67200.1Bradi1g32610.1
Brassica rapaBra009633Bra009589
Carica papayaevm.model.supercontig_163.3evm.model.supercontig_65.21
Capsella rubellaCarubv10000742mCarubv10019008m
Chlamydomonas reinhardtiiCre01.g038550.t1.3Cre16.g689150.t1.2Cre01.g006800.t1.3
Citrus clementinaCiclev10011473mCiclev10001141mCiclev10001076m
Citrus sinensisorange1.1g022615morange1.1g017114morange1.1g016648morange1.1g009759morange1.1g027511m
Cucumis sativusCucsa.176160.1Cucsa.143020.1
Eucalyptus grandisEucgr.A00516.1Eucgr.J00902.1
Fragaria vescamrna18817.1-v1.0-hybridmrna24819.1-v1.0-hybrid
Glycine maxGlyma03g14200.1Glyma01g27840.1Glyma18g42540.1Glyma07g17680.4Glyma07g17680.3
Glyma07g17680.2Glyma07g17680.1Glyma20g12140.9Glyma20g12140.8Glyma20g12140.7
Glyma20g12140.6Glyma20g12140.5Glyma20g12140.4Glyma20g12140.3Glyma20g12140.2
Glyma20g12140.10Glyma13g25060.1
Gossypium raimondiiGorai.012G112200.2Gorai.012G112200.1Gorai.002G261700.2Gorai.002G261700.6Gorai.002G261700.4
Gorai.002G261700.3Gorai.002G261700.1Gorai.003G143800.9Gorai.003G143800.8Gorai.003G143800.7
Gorai.003G143800.6Gorai.003G143800.5Gorai.003G143800.4Gorai.003G143800.3Gorai.003G143800.2
Gorai.003G143800.10Gorai.003G143800.1
Linum usitatissimumLus10004832Lus10002499Lus10024892Lus10022925
Malus domesticaMDP0000899469MDP0000143617MDP0000297386MDP0000273680MDP0000203472
MDP0000184748MDP0000198677
Manihot esculentacassava4.1_007989mcassava4.1_005643mcassava4.1_032287m
Medicago truncatulaMedtr4g015260.1Medtr7g067340.1
Mimulus guttatusmgv1a004620mmgv1a004551mmgv1a006150mmgv1a006148m
Oryza sativaLOC_Os01g04920.1LOC_Os07g01030.1LOC_Os03g15840.1LOC_Os07g16960.1
Panicum virgatumPavirv00011082mPavirv00023556mPavirv00064963mPavirv00000330mPavirv00022111m
Pavirv00063251mPavirv00030308mPavirv00006595mPavirv00056553mPavirv00006877m
Physcomitrella patensPp1s24_194V6.1Pp1s106_103V6.1
Phaseolus vulgarisPhvul.010G005100.1Phvul.008G106900.1Phvul.005G132400.1Phvul.002G226400.1
Picea abiesMA_158718g0080MA_60607g0010MA_159042g1330MA_159118g0680MA_159090g0090
MA_159042g1140
Populus trichocarpaPotri.016G112600.4Potri.016G112600.3Potri.016G112600.2Potri.016G112600.1Potri.006G097600.3
Potri.006G097600.2Potri.006G097600.1Potri.016G130000.1
Prunus persicappa004263mppa005676mppa018035m
Ricinus communis35899.m00002429969.m00027234675.m00002848584.m00001330418.m000015
32791.m00002229638.m00053127698.m000067
Setaria italicaSi020690mSi001496mSi035897mSi035683m
Selaginella moellendorffii170091406541
Sorghum bicolorSb02g000240.1Sb03g006480.1Sb01g040150.1Sb02g008800.1
Thellungiella halophilaThhalv10013276mThhalv10002532m
Vitis viniferaGSVIVT01033998001GSVIVT01024777001
Volvox carteriVocar20009459mVocar20001320m
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)