| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra005694 |
| Family | GT4 |
| Protein Properties | Length: 526 Molecular Weight: 57736.3 Isoelectric Point: 8.1212 |
| Chromosome | Chromosome/Scaffold: 03 Start: 157214 End: 160057 |
| Description | sulfoquinovosyldiacylglycerol 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT4 | 319 | 466 | 7.5e-40 |
| EPEKPLVIHVGRIGVEKSLELLKSVMDKLPEARIAFIGDGPYREDLEKLFAGMPAVFTGMLQGEELSQAYASGDVFVMPSESETLGLVVLEAMASGLPVV AARAGGIPDIIPEEQEGKTGFLFNPGDVEDCVTKLRTLLHDKETREII | |||
| Full Sequence |
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| Protein Sequence Length: 526 Download |
| MNLSSSSLSI NLSPTHHPFL PSTTTNTNTC SSSSSATTCS PRCSFVSSPV SLGASCPRRS 60 SPVSLIRRKS QSFFAGLEVV SASSSGSSGM TITEARGEGD ESEIEAPLLD PESYSKPRRI 120 ALFVEPSPFA YVSGYKNRFQ NFIRYLREMG DEVIVVTTHE GVPEEFYGAK VIGSRSFPCP 180 YYQKVPLSLA LSPRIISEIA RFKPDIIHAS SPGIMVFGAL AIAKMLSVPI VMSYHTHVPV 240 YIPRYTFSWL VQPMWSIIRF LHRAADLTLV PSAAIGKDLI AAGATAANQL RLWNKGVDSE 300 SFNPRFRSQE MRIRLSNGEP EKPLVIHVGR IGVEKSLELL KSVMDKLPEA RIAFIGDGPY 360 REDLEKLFAG MPAVFTGMLQ GEELSQAYAS GDVFVMPSES ETLGLVVLEA MASGLPVVAA 420 RAGGIPDIIP EEQEGKTGFL FNPGDVEDCV TKLRTLLHDK ETREIIGKAA REETEKYDWR 480 AATTKIRNEQ YGAAIWFWRK KKAQVLGPIN WLVKRLFPVP PEVNA* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03798 | GT1_wlbH_like | 7.0e-52 | 120 | 481 | 381 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
| cd03801 | GT1_YqgM_like | 1.0e-71 | 119 | 487 | 379 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
| TIGR00032 | argG | 5.0e-73 | 119 | 478 | 372 | + argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria [Amino acid biosynthesis, Glutamate family]. | ||
| TIGR00009 | L28 | 3.0e-129 | 119 | 482 | 367 | + ribosomal protein L28. This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture and are not included [Protein synthesis, Ribosomal proteins: synthesis and modification]. | ||
| PLN02871 | PLN02871 | 0 | 60 | 522 | 463 | + UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK76635.1 | 0 | 90 | 520 | 1 | 430 | unknown protein [Arabidopsis thaliana] |
| EMBL | CAB69850.1 | 0 | 41 | 520 | 34 | 466 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_568085.2 | 0 | 41 | 520 | 34 | 506 | SQD2 (sulfoquinovosyldiacylglycerol 2); UDP-glycosyltransferase/ UDP-sulfoquinovose:DAG sulfoquinovosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002309122.1 | 0 | 87 | 520 | 1 | 432 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323560.1 | 0 | 96 | 520 | 3 | 427 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3c4v_B | 0.000000000000002 | 265 | 495 | 165 | 406 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3c4v_A | 0.000000000000002 | 265 | 495 | 165 | 406 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3c4q_B | 0.000000000000002 | 265 | 495 | 165 | 406 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The First Step In Mycothiol Biosynthesis. Organism : Corynebacterium Glutamicum- Complex With Udp |
| PDB | 3c4q_A | 0.000000000000002 | 265 | 495 | 165 | 406 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The First Step In Mycothiol Biosynthesis. Organism : Corynebacterium Glutamicum- Complex With Udp |
| PDB | 3c48_B | 0.000000000000002 | 265 | 495 | 185 | 426 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure. |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EG473715 | 299 | 211 | 509 | 0 |
| HO813118 | 319 | 167 | 485 | 0 |
| DV711665 | 301 | 197 | 497 | 0 |
| EX107841 | 281 | 41 | 321 | 0 |
| CO088719 | 290 | 100 | 388 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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