| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra005799 |
| Family | PL1 |
| Protein Properties | Length: 513 Molecular Weight: 55656.5 Isoelectric Point: 7.3137 |
| Chromosome | Chromosome/Scaffold: 03 Start: 702269 End: 706285 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 159 | 357 | 0 |
| IIFSGDMGITLRHELIVGSFKTIDGRGTNVQITGHGCLTIQQVSHVIIHNVHIHHCKPSGNTLVASSPMHVGFRGVSDGDGISVLASHHIWVDHCSLGYC SDGLIDVILASTAVTVSNNYFHHHDEVMLLGHDDRYTADSGMQVTIAFNHFGEGLVQRMPRGRHGYIHEVNNDFTAWEMYAIGGSANPTINSQGNRYTA | |||
| Full Sequence |
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| Protein Sequence Length: 513 Download |
| MVAHKRVHNP LRPTCICIIW FCLLVSLPYH GRASSFNLSL PHQHPFPEHV VLNVQRKLND 60 SLSRRNLLTY QQDDATTASS APIPSCLTGN PIDDCWRCDP NWSQNRQRLA DCSIGFGQGT 120 LGGKGGRFYL VTDSSDNDAA NPLPGTLRHA VIQPEPLWII FSGDMGITLR HELIVGSFKT 180 IDGRGTNVQI TGHGCLTIQQ VSHVIIHNVH IHHCKPSGNT LVASSPMHVG FRGVSDGDGI 240 SVLASHHIWV DHCSLGYCSD GLIDVILAST AVTVSNNYFH HHDEVMLLGH DDRYTADSGM 300 QVTIAFNHFG EGLVQRMPRG RHGYIHEVNN DFTAWEMYAI GGSANPTINS QGNRYTAPID 360 PNAKEVTKRV DSNEKHWGKW NWRTEGDVMV NGAFFVPSGD GVSPAYARAT SLQAKTADVI 420 DQLTVNAGVF GDPSGRNGQG GGFPGITGGG GTVTRGYSKG GPGGGSSDSD DGIFTMIFGS 480 NSSAAAVALR PRQVWSIVFT IILLWYFPHH RR* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 5.0e-23 | 172 | 373 | 220 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 8.0e-56 | 176 | 355 | 188 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-63 | 164 | 359 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL24172.1 | 0 | 165 | 512 | 1 | 348 | putative pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_196051.2 | 0 | 1 | 512 | 1 | 517 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002268818.1 | 0 | 35 | 486 | 25 | 463 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002316399.1 | 0 | 11 | 433 | 1 | 414 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002534016.1 | 0 | 10 | 485 | 3 | 463 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 90 | 429 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 90 | 429 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-18 | 109 | 355 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000002 | 170 | 375 | 125 | 350 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jta_A | 0.0000000000007 | 115 | 428 | 22 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX097340 | 287 | 1 | 287 | 0 |
| CK243724 | 330 | 42 | 371 | 0 |
| HO778688 | 390 | 47 | 436 | 0 |
| DY286386 | 392 | 17 | 404 | 0 |
| DY293469 | 371 | 17 | 383 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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