| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra005825 |
| Family | GH3 |
| Protein Properties | Length: 664 Molecular Weight: 72222.8 Isoelectric Point: 7.1475 |
| Chromosome | Chromosome/Scaffold: 03 Start: 804644 End: 807708 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 106 | 341 | 0 |
| LVSRLGIPMIYGIDAVHGHNNVFNATIFPHNVGLGATRDPDLVKRIGAATAVEVRATGIPYTFAPCIAVCRDPRWGRCYESYGEDHKVVENMTDIILGLQ GEPPSNYKHGVPFVGGKDKVAACAKHYVGDGGTTRGINENNTVTDLHSLLSIHMPAYADAIYKGVSTVMVSYSSWNGEKMHANTKLITGYLKGTLKFKGF VISDWQGVDKISSPPHSNYTASVRAAIEAGIDMVMV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 664 Download |
| MSKVPVRILL WMCCCVWVCN GDDGEYLLYK DPKQKVSDRV VDLLGRMTLE EKIGQMVQID 60 RSVATVNIMR DYFIGSVLSG GGSAPLPEAT AQNWVDMINE YQKGALVSRL GIPMIYGIDA 120 VHGHNNVFNA TIFPHNVGLG ATRDPDLVKR IGAATAVEVR ATGIPYTFAP CIAVCRDPRW 180 GRCYESYGED HKVVENMTDI ILGLQGEPPS NYKHGVPFVG GKDKVAACAK HYVGDGGTTR 240 GINENNTVTD LHSLLSIHMP AYADAIYKGV STVMVSYSSW NGEKMHANTK LITGYLKGTL 300 KFKGFVISDW QGVDKISSPP HSNYTASVRA AIEAGIDMVM VPFNFTEFVN DLTSLVKNKV 360 IPVTRIDDAV RRILRVKFTM GLFENPLADY SFSNELGSQA HRDLAREAVR KSLVLLKNGN 420 KTNPMLPLPR KVSKILVTGT HADNLGYQCG GWTITWQGFN GNKDTRGTTI LGAVKSAVDK 480 TTEVIFNENP DAEFLKSNNF SYAIIAVGEP PYAETAGDND KLTMMDPGPA IVTSTCQAVK 540 CVVVVVSGRP LVMEPYVDSI EALVAAWLPG TEGKGVADAL FGDHGFSGKL PVTWFRNTEQ 600 LPMNFGDSHY DPLFAYGTGL ETESVVSTVA RSTSGSAAGA KPCLITLLVC LFFFPSLSWG 660 LRR* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03080 | PLN03080 | 8.0e-37 | 105 | 616 | 571 | + Probable beta-xylosidase; Provisional | ||
| pfam01915 | Glyco_hydro_3_C | 3.0e-40 | 413 | 620 | 226 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| PRK15098 | PRK15098 | 9.0e-79 | 40 | 641 | 675 | + beta-D-glucoside glucohydrolase; Provisional | ||
| pfam00933 | Glyco_hydro_3 | 3.0e-89 | 48 | 376 | 333 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| COG1472 | BglX | 2.0e-89 | 47 | 455 | 418 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC42711.1 | 0 | 97 | 658 | 1 | 566 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_680141.2 | 0 | 1 | 658 | 1 | 663 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | XP_002262992.1 | 0 | 25 | 653 | 24 | 649 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002271545.1 | 0 | 28 | 623 | 26 | 622 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002514453.1 | 0 | 1 | 649 | 1 | 646 | Periplasmic beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1x39_A | 0 | 25 | 624 | 1 | 601 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1x38_A | 0 | 25 | 624 | 1 | 601 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1lq2_A | 0 | 25 | 624 | 1 | 601 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| PDB | 1j8v_A | 0 | 25 | 624 | 1 | 601 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| PDB | 1iex_A | 0 | 25 | 624 | 1 | 601 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
| linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
