| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra005832 |
| Family | CE8 |
| Protein Properties | Length: 571 Molecular Weight: 62769.7 Isoelectric Point: 9.0107 |
| Chromosome | Chromosome/Scaffold: 03 Start: 836974 End: 838987 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 263 | 555 | 0 |
| NIVVAQDGSGKYRTISEALVEVEEKNEKRTIIYVKKGVYVENVRVEKKKWNVVMVGDGQSKTIVSGGLNFIDGTPTFQTATFAVFGKGFMARDMGFRNTA GPAKHQAVALMVSADLSVFYRCTMDAFQDTMYAHAQRQFYRECDIFGTVDFIFGNAAVVFQNCNILPRRPMKGQQNTITAQGKKDPNQNTGISIHNCTIL PLDDLTDVQTFLGRPWKDFSTTVIMKSFMDGFINPKGWLPWVGDNAPDTIFYAEHLNFGPGASTKNRVKWRGLRTFLTKKEANRFTVKPFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 571 Download |
| MASYGKINEH EQAKLEARRR TRKRIAIIAI SSIVLVCIVV GAVVGTAANS SGKKPSSTEG 60 NGNGDSISVS VKAVCDVTLH KDKCLETVGS APNASTLNPE ELFNYAVQIT LTELTKVLNG 120 FSDNKHTDNA TSAAMGACVE LIELAVDQLN ETMTSLKDHT ASSSKSVADL RTWLSSVETY 180 QETCMEALVE ANNPNTTTFG ETHLKSSTEM TSNALAIITW LGKIADSIKL NHRRLLATGD 240 VGTLEMMQGR RLLESGDLRK IANIVVAQDG SGKYRTISEA LVEVEEKNEK RTIIYVKKGV 300 YVENVRVEKK KWNVVMVGDG QSKTIVSGGL NFIDGTPTFQ TATFAVFGKG FMARDMGFRN 360 TAGPAKHQAV ALMVSADLSV FYRCTMDAFQ DTMYAHAQRQ FYRECDIFGT VDFIFGNAAV 420 VFQNCNILPR RPMKGQQNTI TAQGKKDPNQ NTGISIHNCT ILPLDDLTDV QTFLGRPWKD 480 FSTTVIMKSF MDGFINPKGW LPWVGDNAPD TIFYAEHLNF GPGASTKNRV KWRGLRTFLT 540 KKEANRFTVK PFIDGKKWLP STKVPFKSDF * 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02484 | PLN02484 | 2.0e-162 | 58 | 566 | 527 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02745 | PLN02745 | 3.0e-168 | 53 | 567 | 547 | + Putative pectinesterase/pectinesterase inhibitor | ||
| PLN02468 | PLN02468 | 0 | 1 | 570 | 575 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 0 | 53 | 568 | 537 | + pectinesterase | ||
| pfam01095 | Pectinesterase | 0 | 263 | 555 | 297 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO42295.1 | 0 | 1 | 570 | 1 | 564 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_187682.1 | 0 | 2 | 568 | 3 | 559 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_196115.1 | 0 | 1 | 570 | 1 | 564 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002311918.1 | 0 | 1 | 567 | 4 | 565 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515781.1 | 0 | 3 | 567 | 6 | 570 | Pectinesterase-3 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 261 | 566 | 2 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 263 | 566 | 8 | 315 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 8e-18 | 263 | 561 | 5 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 8e-18 | 263 | 561 | 5 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 9e-18 | 263 | 561 | 5 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
