y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra005833 |
Family | CE8 |
Protein Properties | Length: 594 Molecular Weight: 65184.6 Isoelectric Point: 7.7777 |
Chromosome | Chromosome/Scaffold: 03 Start: 839749 End: 842767 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 278 | 572 | 0 |
IVGPYENDNFTTITEAVAAAPNQTFPEDGYYVIYAREGLYEEYIVISNKKRNIMLIGDGINKTIISGNHSFIDGWTTYNSSTFAVVGDRFVAVDVTFRNT AGPEKHQAVAVRNNADGSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAAVFQNCNIYARKPMEHQKNAVTAHGRTDPNQKTGISIINCTI GAAPDLAADPNPAMTFLGRPWKPYSRTVYIQSYISDAIQPDGWLEWNGTTGLDTISYGEYDNFGPGANTSKRVQWSGYSLLNLAQAMNFTVYNFT |
Full Sequence |
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Protein Sequence Length: 594 Download |
MQTQHFCSSL LFLSLLCLSW ALIISSTQPS SQPPSQPPSQ PPSQSPAQSP SQQAKIACKA 60 TPYPKLCRTI LSAFKSSPSD PYRYGKFTLK QCLKQARRLS KVINRFAQRV QKDPGASTAE 120 EVSAVADCGD LAELSVEYLE TVSDELKAAE LMTEALVDRV SSLLGGVVTN QQTCLDGLED 180 AKSAFATVIG SPLGNVTQLY SVSLGLVSHA LSRNLKRYKG SKGKIFGGGK KAVREPLETL 240 IKVLRKTCDK SKDCRNDRKL GELGETSGGS ILVREAVIVG PYENDNFTTI TEAVAAAPNQ 300 TFPEDGYYVI YAREGLYEEY IVISNKKRNI MLIGDGINKT IISGNHSFID GWTTYNSSTF 360 AVVGDRFVAV DVTFRNTAGP EKHQAVAVRN NADGSTFYRC SFEGYQDTLY VHSLRQFYRE 420 CDIYGTIDFI FGNAAAVFQN CNIYARKPME HQKNAVTAHG RTDPNQKTGI SIINCTIGAA 480 PDLAADPNPA MTFLGRPWKP YSRTVYIQSY ISDAIQPDGW LEWNGTTGLD TISYGEYDNF 540 GPGANTSKRV QWSGYSLLNL AQAMNFTVYN FTLGDTWLPQ TDIPFYGGLL RTE* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02468 | PLN02468 | 2.0e-136 | 55 | 589 | 540 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02201 | PLN02201 | 8.0e-144 | 123 | 589 | 476 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN03043 | PLN03043 | 0 | 56 | 590 | 536 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
PLN02713 | PLN02713 | 0 | 57 | 590 | 543 | + Probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 277 | 575 | 300 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF19577.1 | 0 | 1 | 593 | 1 | 617 | AC011708_20 putative pectinesterase [Arabidopsis thaliana] |
DDBJ | BAH20370.1 | 0 | 145 | 593 | 1 | 450 | AT3G10720 [Arabidopsis thaliana] |
RefSeq | NP_187683.2 | 0 | 1 | 593 | 3 | 619 | pectinesterase, putative [Arabidopsis thaliana] |
RefSeq | NP_196116.1 | 0 | 56 | 593 | 86 | 624 | pectinesterase, putative [Arabidopsis thaliana] |
RefSeq | XP_002515774.1 | 0 | 56 | 590 | 34 | 568 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 277 | 589 | 9 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 286 | 589 | 14 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 6e-26 | 287 | 579 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 6e-26 | 287 | 579 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 6e-26 | 287 | 579 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |