| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra005934 |
| Family | CE8 |
| Protein Properties | Length: 362 Molecular Weight: 39990.4 Isoelectric Point: 8.4008 |
| Chromosome | Chromosome/Scaffold: 03 Start: 1302912 End: 1304499 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 67 | 350 | 0 |
| ITVNQKGGANFKTINEAIKSIPTGNKNRVVIKLAPGVYNEKVTIDVARPFITLLGQPGSETILTYHGTAAQYGTVESATLIVWSDYFLAANLIIKNTAPM PKPGAQGQALAMRINGDKAAFYSCKFYGFQDTLCDDKGNHFFKDCYIEGTYDFIFGRGASLYLNTQLHAVGDGLRVITAQARQSDTEQNGYTFVHCKITG TGTGIYLGRSWMSHPKVIYAFTEMSSVVNPAGWRENFNRGYDKTVFYGEYKCFGPGSHQEKRVPYTQDVDQNEVRPFLTLGYIK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 362 Download |
| MDYISLTIVA FLVAFASPVV LATDTAPIPE DRSQIPQWFQ TNVAPYSQRK GTLDPSLEAA 60 ETARQVITVN QKGGANFKTI NEAIKSIPTG NKNRVVIKLA PGVYNEKVTI DVARPFITLL 120 GQPGSETILT YHGTAAQYGT VESATLIVWS DYFLAANLII KNTAPMPKPG AQGQALAMRI 180 NGDKAAFYSC KFYGFQDTLC DDKGNHFFKD CYIEGTYDFI FGRGASLYLN TQLHAVGDGL 240 RVITAQARQS DTEQNGYTFV HCKITGTGTG IYLGRSWMSH PKVIYAFTEM SSVVNPAGWR 300 ENFNRGYDKT VFYGEYKCFG PGSHQEKRVP YTQDVDQNEV RPFLTLGYIK GSTWLLPPPK 360 Y* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 4.0e-88 | 66 | 357 | 303 | + probable pectinesterase | ||
| PLN02634 | PLN02634 | 1.0e-90 | 12 | 357 | 356 | + probable pectinesterase | ||
| PLN02432 | PLN02432 | 3.0e-97 | 66 | 355 | 290 | + putative pectinesterase | ||
| PLN02682 | PLN02682 | 5.0e-111 | 8 | 357 | 365 | + pectinesterase family protein | ||
| PLN02665 | PLN02665 | 0 | 1 | 361 | 363 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB09012.1 | 0 | 24 | 361 | 26 | 364 | pectin methylesterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_177152.2 | 0 | 1 | 359 | 1 | 359 | PPME1; pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_196359.1 | 0 | 24 | 361 | 24 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_196360.1 | 0 | 24 | 361 | 24 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_568181.1 | 0 | 1 | 359 | 1 | 359 | pectinesterase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 2e-39 | 67 | 355 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 6e-36 | 69 | 355 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 2e-20 | 56 | 334 | 25 | 322 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 5e-20 | 60 | 233 | 1 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 5e-20 | 60 | 233 | 1 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
