| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra006031 |
| Family | CE8 |
| Protein Properties | Length: 548 Molecular Weight: 59813.1 Isoelectric Point: 5.8737 |
| Chromosome | Chromosome/Scaffold: 03 Start: 1675076 End: 1677076 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 236 | 538 | 0 |
| DVTVCKTGECGYKTVQDAVNAAPDNNGVSKFVIKISEGVYEETVRIPFEKMNVVFVGDGMGKTVITGSLNAGMPGMTTYNTATVGVVGDGFMARDITFQN TAGPDAHQAVAFRSDSDFSLLENCEFLGNQDTLYAHGLRQFYKSCRIQGNVDFIFGNSASVFQDCEILIAPRQVNPEKGEKNAVTAQGRIDPSQSTGFVF LNCLINGTDDYMKLYKANPKVHKNFLGRPWKDYSRTVFIGCNMEALITPDGWLPWSGDFALQTLFYGESKNTGVGSDRSQRVSWSSEIPDEHVHVYSVDN FIQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 548 Download |
| MSSVLILLFS LFLLASPSSS SRHHHHHHNK SPPLNPSSST ASQIRLACNA TRYPDQCLSS 60 LSQPGLVPPD PNPSQIIHSA ISVSYQNLET AQSKVKSILD ASVGNLNRTN AANTCLQLLS 120 YSKHRTLSTD NALTRGRIKD ARAWMSAALV YQYDTWSALK YVNDTAQVGE TMSFLDGLIH 180 VTSNALSMMV SYDNFGDDLA SWIPPATERD GFWEKTGPGM GSDPGALGFP SGLKEDVTVC 240 KTGECGYKTV QDAVNAAPDN NGVSKFVIKI SEGVYEETVR IPFEKMNVVF VGDGMGKTVI 300 TGSLNAGMPG MTTYNTATVG VVGDGFMARD ITFQNTAGPD AHQAVAFRSD SDFSLLENCE 360 FLGNQDTLYA HGLRQFYKSC RIQGNVDFIF GNSASVFQDC EILIAPRQVN PEKGEKNAVT 420 AQGRIDPSQS TGFVFLNCLI NGTDDYMKLY KANPKVHKNF LGRPWKDYSR TVFIGCNMEA 480 LITPDGWLPW SGDFALQTLF YGESKNTGVG SDRSQRVSWS SEIPDEHVHV YSVDNFIQAD 540 EWALMSS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02713 | PLN02713 | 4.0e-107 | 47 | 542 | 551 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02468 | PLN02468 | 6.0e-109 | 44 | 542 | 512 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 1.0e-112 | 48 | 542 | 508 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 1.0e-163 | 236 | 540 | 308 | + Pectinesterase. | ||
| PLN02708 | PLN02708 | 0 | 40 | 547 | 511 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB09534.1 | 0 | 33 | 547 | 60 | 577 | pectin methylesterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_196538.1 | 0 | 33 | 547 | 34 | 551 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_568991.2 | 0 | 20 | 543 | 61 | 598 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002275218.1 | 0 | 24 | 547 | 41 | 573 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002281640.1 | 0 | 1 | 542 | 1 | 550 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 231 | 519 | 3 | 281 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 236 | 542 | 4 | 303 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 9e-17 | 247 | 492 | 18 | 284 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 9e-17 | 247 | 492 | 18 | 284 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 1e-16 | 247 | 492 | 18 | 284 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
