| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra006279 |
| Family | PL1 |
| Protein Properties | Length: 476 Molecular Weight: 54211.5 Isoelectric Point: 8.682 |
| Chromosome | Chromosome/Scaffold: 03 Start: 2815155 End: 2817015 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 187 | 392 | 0 |
| IQKEPLWIIFKNDMSIRLNQELLINSFKTIDARGANVHIAHGAGVTMQFVRHVIIHGLHIHHISESSGGMIRDSADHFGMRTRADGDGLSIYGSSNIWLD HVSMSQCQDGLIDAIVGSTAITISNSHFTHHNDVMLLGAQNTYDLDKKMQVTVAYNHFGKGLVQRMPRIRWGFVHVVNNDYTHWELYAIGGSQSPTILSQ GNRFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 476 Download |
| MVMARLLKLM LVLCIVGLIP TIRADMSELD EYWSGRADEA REFTLQAYHS DPYEIIDHFH 60 ERHYDNSTDV TPTEEDNNTK PEEVENEVIE MVGSGDNSTN STRRSLRGKG KGKWSKLKGP 120 CTASNPIDKC WRCRKNWSKR RKKLVKCVRG FGHMTVGGKH GRIYVVTSNL DEDMVNPEPG 180 TLRHAVIQKE PLWIIFKNDM SIRLNQELLI NSFKTIDARG ANVHIAHGAG VTMQFVRHVI 240 IHGLHIHHIS ESSGGMIRDS ADHFGMRTRA DGDGLSIYGS SNIWLDHVSM SQCQDGLIDA 300 IVGSTAITIS NSHFTHHNDV MLLGAQNTYD LDKKMQVTVA YNHFGKGLVQ RMPRIRWGFV 360 HVVNNDYTHW ELYAIGGSQS PTILSQGNRF IAPPHLPHYR EVTKRDYAPE EEWKHWNWRS 420 EKDIFMNGAY FRQSGDPNYE TDHTRRNMIK PKNGYAVSKL TKYAGALDCR VGRRC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 2.0e-14 | 25 | 71 | 47 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 9.0e-23 | 273 | 390 | 130 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-53 | 206 | 390 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-63 | 199 | 394 | 207 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM60924.1 | 0 | 1 | 475 | 1 | 475 | putative pectate lyase [Arabidopsis thaliana] |
| GenBank | ABK28696.1 | 0 | 1 | 475 | 1 | 472 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_186776.1 | 0 | 1 | 475 | 1 | 475 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_197015.4 | 0 | 1 | 475 | 1 | 472 | lyase/ pectate lyase [Arabidopsis thaliana] |
| Swiss-Prot | Q9LFP5 | 0 | 1 | 475 | 1 | 472 | PEL19_ARATH RecName: Full=Putative pectate lyase 19; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 125 | 467 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 125 | 467 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.000000000000002 | 194 | 392 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.000000000002 | 203 | 390 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 0.000000000002 | 273 | 390 | 190 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
