Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra006472 |
Family | GH14 |
Protein Properties | Length: 605 Molecular Weight: 65756.1 Isoelectric Point: 6.1093 |
Chromosome | Chromosome/Scaffold: 03 Start: 3652432 End: 3656636 |
Description | beta-amylase 3 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 86 | 240 | 0 |
FVGLPLDTVSDCNNVNHMKAITAGLKALKLLGVEGVELPVFWGVVEREAAGKYDWSGYLAVAEIVKKVGLKLQVSLSFHGSKDPEIGLPDWVAKIGEAEP GMYFTDRYGKQYKDCLSFGVDDVPVLDGKTPLEVYGGFCESFKSAFSDYMGNTIT | |||
GH14 | 313 | 564 | 0 |
LEGITLGMGPDGELRYPSHQHEANLSGAGEFQCYDKHMLSALKHYAESSGNPLWGLGGPHDAPAYDQQPHSTSFFSDGGSWESQYGDFFLTWYSSLLTSH ADRVLSVASSAFSGSGVSVSGKLPLLHQWSKLRSQPSELTAGFYSSNGHDRYEAIAEVFAKNSCRMIVPGMDLSDEHQSPASLSSPEFLLGSIKASCKRQ GVVVSGQNLSASVPGGFERIVENLKDESVGIDLFTYQRMGALFFSPEHFHAF |
Full Sequence |
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Protein Sequence Length: 605 Download |
MEVSVIGNPQ AKICRAELSF RELGFRFGSG ESRNKVSFLA HQGSKWKEIR IRCSPRSVKC 60 EAVVSDQAPF LKPTSNSRSL ESVKLFVGLP LDTVSDCNNV NHMKAITAGL KALKLLGVEG 120 VELPVFWGVV EREAAGKYDW SGYLAVAEIV KKVGLKLQVS LSFHGSKDPE IGLPDWVAKI 180 GEAEPGMYFT DRYGKQYKDC LSFGVDDVPV LDGKTPLEVY GGFCESFKSA FSDYMGNTIT 240 AKMPITIISL LFSFSSSLSP LCHDRTVETI KSHLNNCHIV TAINNPSLLE DNDSAEIKTR 300 QQPMSSSFLA PPLEGITLGM GPDGELRYPS HQHEANLSGA GEFQCYDKHM LSALKHYAES 360 SGNPLWGLGG PHDAPAYDQQ PHSTSFFSDG GSWESQYGDF FLTWYSSLLT SHADRVLSVA 420 SSAFSGSGVS VSGKLPLLHQ WSKLRSQPSE LTAGFYSSNG HDRYEAIAEV FAKNSCRMIV 480 PGMDLSDEHQ SPASLSSPEF LLGSIKASCK RQGVVVSGQN LSASVPGGFE RIVENLKDES 540 VGIDLFTYQR MGALFFSPEH FHAFTVFVRN MNQVELSSYD QAVEAEAQTV SIGSGAGAHS 600 LQTA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00197 | PLN00197 | 3.0e-36 | 83 | 239 | 162 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 1.0e-39 | 73 | 240 | 173 | + beta-amylase | ||
PLN02801 | PLN02801 | 6.0e-46 | 316 | 571 | 267 | + beta-amylase | ||
PLN00197 | PLN00197 | 3.0e-48 | 316 | 588 | 288 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 1.0e-57 | 316 | 573 | 264 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK85300.1 | 0 | 1 | 240 | 1 | 244 | AF402598_1 putative beta-amylase BMY3 [Arabidopsis thaliana] |
GenBank | AAK85300.1 | 0 | 306 | 604 | 236 | 537 | AF402598_1 putative beta-amylase BMY3 [Arabidopsis thaliana] |
RefSeq | NP_197368.1 | 0 | 1 | 240 | 1 | 244 | BMY3; beta-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
RefSeq | NP_197368.1 | 0 | 306 | 604 | 236 | 536 | BMY3; beta-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
RefSeq | XP_002312750.1 | 0 | 313 | 586 | 160 | 437 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1v3i_A | 1.00053e-42 | 263 | 572 | 119 | 442 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
PDB | 1v3i_A | 7e-25 | 74 | 235 | 2 | 169 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
PDB | 1q6g_A | 1.00053e-42 | 263 | 572 | 119 | 442 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
PDB | 1q6g_A | 7e-25 | 74 | 235 | 2 | 169 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
PDB | 2dqx_A | 3.00018e-42 | 263 | 572 | 119 | 442 | A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FY431251 | 275 | 331 | 605 | 0 |
DK509976 | 241 | 1 | 241 | 0 |
FY438232 | 271 | 313 | 582 | 0 |
DK493505 | 234 | 1 | 233 | 0 |
EX095975 | 218 | 1 | 218 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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