| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra006581 |
| Family | CBM43 |
| Protein Properties | Length: 506 Molecular Weight: 54627 Isoelectric Point: 8.2445 |
| Chromosome | Chromosome/Scaffold: 03 Start: 4146920 End: 4148508 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 376 | 461 | 1.1e-22 |
| WCVLSPQAAAGNGPNGATWTSSVEYACQLADCTSLGPGSSCAGLDSAANASYAFNMYFQKMDHRRGSCVFNNLGVVTKIDPSSGSC | |||
| GH17 | 31 | 356 | 0 |
| ACNWGTQASHPMPPNIVVKLLRDNGFNKVKLFEADPGALRALGKSGIQVMVGIPNDLLASMASTVTNAELWVQQNVSQYISKYGTDIRYVAVGNEPFLKT YKDRFVKSTYPALQNVQAALVKAGLGRQVKVTVPLNADVYESGDGLPSSGDFRSDIKTLMVSIVRFLADSVSPITFNIYPFLSLNADPNFPREYAFFPGS GGGGGGAKPVVDGSISYTNVFDANFDTLVSALEKNGFDAEKVEIIVGEVGWPTDGDVNASPALAQRFNQGLLNRIVQGKGTPRRKTAPEVYVFSLVDEDA KSIDPGKFERHWGIFSYDGAVKYPLS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 506 Download |
| MGRHDTYHKL IFFSLSILLL HIPLKNVDAL ACNWGTQASH PMPPNIVVKL LRDNGFNKVK 60 LFEADPGALR ALGKSGIQVM VGIPNDLLAS MASTVTNAEL WVQQNVSQYI SKYGTDIRYV 120 AVGNEPFLKT YKDRFVKSTY PALQNVQAAL VKAGLGRQVK VTVPLNADVY ESGDGLPSSG 180 DFRSDIKTLM VSIVRFLADS VSPITFNIYP FLSLNADPNF PREYAFFPGS GGGGGGAKPV 240 VDGSISYTNV FDANFDTLVS ALEKNGFDAE KVEIIVGEVG WPTDGDVNAS PALAQRFNQG 300 LLNRIVQGKG TPRRKTAPEV YVFSLVDEDA KSIDPGKFER HWGIFSYDGA VKYPLSLGNG 360 RQLVPAKGVR YQAREWCVLS PQAAAGNGPN GATWTSSVEY ACQLADCTSL GPGSSCAGLD 420 SAANASYAFN MYFQKMDHRR GSCVFNNLGV VTKIDPSSGS CRFPIEIDTS RHDETLRPRK 480 SSGAGEGKWG TVVTAAMAVV WAVFY* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 2.0e-6 | 271 | 348 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 3.0e-9 | 376 | 450 | 82 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 5.0e-24 | 376 | 463 | 90 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 6.0e-71 | 30 | 356 | 329 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI27737.1 | 0 | 30 | 485 | 25 | 466 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_197587.1 | 0 | 1 | 502 | 1 | 500 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002277217.1 | 0 | 31 | 485 | 18 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309443.1 | 0 | 30 | 465 | 2 | 425 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516181.1 | 0 | 1 | 504 | 11 | 502 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 0 | 34 | 357 | 5 | 306 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
| PDB | 1aq0_B | 0 | 34 | 357 | 5 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 34 | 357 | 5 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_D | 9.99967e-42 | 34 | 357 | 6 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_C | 9.99967e-42 | 34 | 357 | 6 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
