| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra006587 |
| Family | GH3 |
| Protein Properties | Length: 616 Molecular Weight: 67185.7 Isoelectric Point: 8.8411 |
| Chromosome | Chromosome/Scaffold: 03 Start: 4169132 End: 4172015 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH3 | 109 | 326 | 0 |
| LSTRLGIPIIYGIDALHGHNNADPNLVKRIGEATALEVRATGIQYVFAPCIAVCRDPRWGRCYESYSEDHKIVQKMTEIIPGLQGDLPRGQKGVPFVAGK TKVAACAKHFVGDGGTLRGMNANDTVINSNGLLNIHMPAYYDAVNKGVATVMVSYSSLNGLKMHANKKLITGFLKKKLKFKGIVISDFLGVDWITTPIHA NYSHSIYAAITAGIDMIM | |||
| Full Sequence |
|---|
| Protein Sequence Length: 616 Download |
| MCTLSYFLHT LGLIMLCSSV AANKEPLSNA KYKNPKEPLE VRIKNLMSHM TIEEKLGQMV 60 QVERVNATTK VIKKYFIGSA FSGGGSVPTP NATPEAWVNM VNKIQKAALS TRLGIPIIYG 120 IDALHGHNNA DPNLVKRIGE ATALEVRATG IQYVFAPCIA VCRDPRWGRC YESYSEDHKI 180 VQKMTEIIPG LQGDLPRGQK GVPFVAGKTK VAACAKHFVG DGGTLRGMNA NDTVINSNGL 240 LNIHMPAYYD AVNKGVATVM VSYSSLNGLK MHANKKLITG FLKKKLKFKG IVISDFLGVD 300 WITTPIHANY SHSIYAAITA GIDMIMGSSN LTELIDDLTS QVKRKHIPMS RINDAVERIL 360 RVKFTMGLFE DPMADHSLAN KLGCKEHREL AREAVRKSLV LLKNGENADE PLLPLPKKAK 420 KILVAGTHAD NLGYQCGGWT ITWQGLNSNN LTIGTTILTA VKNTVDPTTQ VVYNENPDTS 480 FVNSSHFDYA IVVIGETPYA EGYGDSTNLT IAEPGPRIME NVCGLVKCVV VVISGRPVMM 540 QPYVSEIDAL VAAWLPGTEG QGVADVLFGD YGFTGKLART WFRTVDQLPM NVGDPHYDPL 600 YPFGFGLTTK ANKQL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03080 | PLN03080 | 7.0e-27 | 17 | 608 | 670 | + Probable beta-xylosidase; Provisional | ||
| pfam01915 | Glyco_hydro_3_C | 7.0e-40 | 399 | 608 | 229 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| PRK15098 | PRK15098 | 6.0e-61 | 8 | 608 | 690 | + beta-D-glucoside glucohydrolase; Provisional | ||
| COG1472 | BglX | 4.0e-61 | 50 | 457 | 441 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam00933 | Glyco_hydro_3 | 7.0e-69 | 51 | 362 | 332 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAQ17461.1 | 0 | 31 | 614 | 27 | 627 | beta-D-glucosidase [Gossypium hirsutum] |
| EMBL | CAA07070.1 | 0 | 6 | 614 | 4 | 628 | beta-D-glucosidase [Tropaeolum majus] |
| RefSeq | NP_197594.2 | 0 | 1 | 612 | 1 | 626 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | NP_197595.2 | 0 | 1 | 613 | 1 | 623 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | XP_002313632.1 | 0 | 11 | 613 | 9 | 626 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1j8v_A | 0 | 32 | 614 | 5 | 604 | A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase |
| PDB | 1iex_A | 0 | 32 | 614 | 5 | 604 | A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase |
| PDB | 1iew_A | 0 | 32 | 614 | 5 | 604 | A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase |
| PDB | 1iev_A | 0 | 32 | 614 | 5 | 604 | A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase |
| PDB | 1ieq_A | 0 | 32 | 614 | 5 | 604 | A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
| linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
