| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra006644 |
| Family | GT47 |
| Protein Properties | Length: 464 Molecular Weight: 52840.6 Isoelectric Point: 10.012 |
| Chromosome | Chromosome/Scaffold: 03 Start: 4441572 End: 4443310 |
| Description | FRA8 homolog |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT47 | 107 | 407 | 0 |
| GMKIYVYDLPARFNADWVTSSDRCASHLFAAEVAIHRALLSDSNVRTLDPEEADFFFVPVYVSCNFSTANGFPSLSHARSLISSAVDFISESYPFWNRTR GSDHVFVASHDFGACFHAMEDMAIEEGIPEFMKKSIILQTFGVNYKHPCQEAEHVVIPPYIPPESVQRAIDRAPANGRRDIWAFFRGKMEVNPKNISGRY YSKGVRTAILKKYGGRRRFHLNRHRFAGYRSEILRSVFCLCPLGWAPWSPRVVESAVLGCVPVVIADGIQLPFSETVRWPEISLTVAEKDVKNLRKILEH V | |||
| Full Sequence |
|---|
| Protein Sequence Length: 464 Download |
| MSLDIKRPIS NKTKKKTGFI VNMQQLNHNN RGGNNLFIVF FRHYYRWILW FFLSLYFFTS 60 YFAGDQSTTT TTTSLISNHK TSSSLPSHAL IESSAIVKPA HASIFSGMKI YVYDLPARFN 120 ADWVTSSDRC ASHLFAAEVA IHRALLSDSN VRTLDPEEAD FFFVPVYVSC NFSTANGFPS 180 LSHARSLISS AVDFISESYP FWNRTRGSDH VFVASHDFGA CFHAMEDMAI EEGIPEFMKK 240 SIILQTFGVN YKHPCQEAEH VVIPPYIPPE SVQRAIDRAP ANGRRDIWAF FRGKMEVNPK 300 NISGRYYSKG VRTAILKKYG GRRRFHLNRH RFAGYRSEIL RSVFCLCPLG WAPWSPRVVE 360 SAVLGCVPVV IADGIQLPFS ETVRWPEISL TVAEKDVKNL RKILEHVTAT NLSTIQRNLR 420 EPAFKRALLY NVPMMEGDAT WHILDALSRK LVRSYRRSRV FSQ* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 1.0e-74 | 106 | 404 | 306 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABI64067.1 | 0 | 44 | 463 | 23 | 442 | glycosyltransferase GT47C [Populus tremula x Populus alba] |
| DDBJ | BAB10615.1 | 0 | 47 | 463 | 49 | 493 | unnamed protein product [Arabidopsis thaliana] |
| RefSeq | NP_197685.2 | 0 | 47 | 463 | 49 | 464 | F8H (FRA8 HOMOLOG); catalytic [Arabidopsis thaliana] |
| RefSeq | XP_002275679.1 | 0 | 3 | 451 | 2 | 440 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314302.1 | 0 | 1 | 463 | 1 | 462 | predicted protein [Populus trichocarpa] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |
