| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra006806 |
| Family | GH33 |
| Protein Properties | Length: 344 Molecular Weight: 37866 Isoelectric Point: 5.2192 |
| Chromosome | Chromosome/Scaffold: 03 Start: 5111133 End: 5112778 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH33 | 10 | 309 | 3.7e-30 |
| LETLTFPAGSAPFKSCHASTIVEVVKDHFLAAYFGGTYEGASDVKIWLQHFKDGQWESPVVVDEEPGVPMWNPVLFKLPSQELLLFYKIGQEVQKWSGCM KRSFDKGRTWTNREQLPPGILGPIKNKPILLEGGTLLCGSSVESWNSWGAWMEVTSDAGRSWRKHGPIYIQGKSLSVIQPVPYQTAAGRLRVLLRSFTGI DRVCISESSDGGENWSFATPTVLPNPNSGIDGVKLKDGRLVLAYNTVSRGVLKVGISLDDGDSWTDVLTLEDTPGMEFSYPAVIQAGDGDVHVTYTYNRT | |||
| Full Sequence |
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| Protein Sequence Length: 344 Download |
| MTVTDFKVVL ETLTFPAGSA PFKSCHASTI VEVVKDHFLA AYFGGTYEGA SDVKIWLQHF 60 KDGQWESPVV VDEEPGVPMW NPVLFKLPSQ ELLLFYKIGQ EVQKWSGCMK RSFDKGRTWT 120 NREQLPPGIL GPIKNKPILL EGGTLLCGSS VESWNSWGAW MEVTSDAGRS WRKHGPIYIQ 180 GKSLSVIQPV PYQTAAGRLR VLLRSFTGID RVCISESSDG GENWSFATPT VLPNPNSGID 240 GVKLKDGRLV LAYNTVSRGV LKVGISLDDG DSWTDVLTLE DTPGMEFSYP AVIQAGDGDV 300 HVTYTYNRTQ IKHVVLKSAT DIDTSDTGNT EKMVEDSWVW VSV* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG4692 | COG4692 | 2.0e-29 | 21 | 319 | 353 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | ||
| pfam13088 | BNR_2 | 2.0e-97 | 36 | 302 | 282 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61202.1 | 0 | 1 | 324 | 1 | 324 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_001078763.1 | 0 | 1 | 324 | 12 | 335 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| RefSeq | NP_001154784.1 | 0 | 1 | 324 | 2 | 325 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| RefSeq | NP_568864.2 | 0 | 1 | 324 | 1 | 324 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| RefSeq | NP_851204.1 | 0 | 1 | 324 | 6 | 329 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| ES962106 | 261 | 30 | 290 | 0 |
| DK493056 | 244 | 1 | 244 | 0 |
| EV057257 | 236 | 1 | 236 | 0 |
| DK513241 | 232 | 1 | 232 | 0 |
| EV550034 | 233 | 5 | 237 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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