| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra006850 |
| Family | GH35 |
| Protein Properties | Length: 723 Molecular Weight: 81035.3 Isoelectric Point: 9.054 |
| Chromosome | Chromosome/Scaffold: 03 Start: 5333029 End: 5337064 |
| Description | beta-galactosidase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH35 | 37 | 338 | 0 |
| IINGQRRILLSGSIHYPRSTPEMWPGLIQKAKEGGLDVIETYVFWNGHEPSPGNYYFGDRYDLVKFIKLVHQAGLYVNLRIGPYVCAEWNFGGFPVWLKF VPGMAFRTDNEPFKAAMKKFTEKIVWMMKAEKLFQTQGGPIILAQIENEYGPVEWEIGAPGKAYTKWVAQMALGLSTGVPWIMCKQEDAPSPIIDTCNGY YCENFKPNSNNKPKMWTENWTGWYTEFGGAVPYRPVEDIAYSVARFIQNGGSFVNYYMYHGGTNFDRTAGEFMASSYDYDAPLDEYGLTREPKYSHLKAL HK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 723 Download |
| MGSNFRDKAW IFLAILCYSS LICSVKATVS YDRKAVIING QRRILLSGSI HYPRSTPEMW 60 PGLIQKAKEG GLDVIETYVF WNGHEPSPGN YYFGDRYDLV KFIKLVHQAG LYVNLRIGPY 120 VCAEWNFGGF PVWLKFVPGM AFRTDNEPFK AAMKKFTEKI VWMMKAEKLF QTQGGPIILA 180 QIENEYGPVE WEIGAPGKAY TKWVAQMALG LSTGVPWIMC KQEDAPSPII DTCNGYYCEN 240 FKPNSNNKPK MWTENWTGWY TEFGGAVPYR PVEDIAYSVA RFIQNGGSFV NYYMYHGGTN 300 FDRTAGEFMA SSYDYDAPLD EYGLTREPKY SHLKALHKVI KLSEPALVSA DATVTYLGAK 360 QEAHVFWSKS SCAAFLSNND ANSAARVMFR GFPYDLPPWS VSILPDCKTE YYNTAKVNAP 420 RVHRNMVPTG TRFSWESFNE ATPSANERDT FARNGLVEQI SMTWDKSDYF WYLTDITVGA 480 GERFLKTGDY PLLTIWSAGH ALHVFVNGQL AGSAYGGLSH PKLTFSQKIK LHAGVNKLAL 540 LSVAVGLPNV GQHFETWNKG VLGPVTLKGV NSGTWDMSKW KWSYKIGVKG EAMSLHTDSS 600 SVSWNQGSYV IKKQPLTWYK STFAAPGGNE PLAIDMNTMG KGHVWINGRN IGRHWPAYKA 660 QGNCGRCNYA GTFDAKKCLS NCGEASQRWY HVPRSWLKSQ NLIVVFEEWG GDPSGISLVK 720 RT* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02449 | Glyco_hydro_42 | 0.001 | 51 | 187 | 151 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
| COG1874 | LacA | 4.0e-20 | 29 | 331 | 352 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam01301 | Glyco_hydro_35 | 1.0e-151 | 37 | 340 | 320 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 11 | 722 | 716 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK96780.1 | 0 | 1 | 722 | 1 | 724 | beta-galactosidase [Arabidopsis thaliana] |
| EMBL | CAB39679.1 | 0 | 1 | 722 | 1 | 727 | putative beta-galactosidase [Arabidopsis thaliana] |
| RefSeq | NP_190852.2 | 0 | 1 | 722 | 1 | 725 | BGAL2 (beta-galactosidase 2); beta-galactosidase/ catalytic/ cation binding [Arabidopsis thaliana] |
| RefSeq | NP_200498.1 | 0 | 1 | 722 | 1 | 724 | BGAL4 (beta-galactosidase 4); beta-galactosidase [Arabidopsis thaliana] |
| RefSeq | NP_849553.1 | 0 | 1 | 722 | 1 | 726 | BGAL12 (beta-galactosidase 12); beta-galactosidase/ catalytic/ cation binding [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 6e-40 | 26 | 336 | 5 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 2e-39 | 29 | 344 | 11 | 339 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 2e-39 | 29 | 344 | 11 | 339 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
