Basic Information | |
---|---|
Species | Brassica rapa |
Cazyme ID | Bra006976 |
Family | PL1 |
Protein Properties | Length: 458 Molecular Weight: 50779 Isoelectric Point: 6.3717 |
Chromosome | Chromosome/Scaffold: 09 Start: 26624901 End: 26628114 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 123 | 321 | 0 |
IVFPSNMMIKLKHELIFNSYKTLDGRGANVHIVGGGCITLQYVSNIIIHNIHIHHCHPSGNTNIRSSPTHYGLRTESDGDGISIFGSKDIWIDHCSLSRC KDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYEPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTA |
Full Sequence |
---|
Protein Sequence Length: 458 Download |
MGFAMLNKTL LLIPHPDPEL VAHDVHWRVN ASIWRRQAMD TTDQAGSNQC FTGNPIDDCW 60 KCDTNWPNNR QRLADCGIGF GQYALGGKGG RFYFVTDSSD DDVVDPKPGT LRYGVIQVEP 120 LWIVFPSNMM IKLKHELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCHP 180 SGNTNIRSSP THYGLRTESD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN 240 NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLVQR MPRCRRGYIH VVNNDFTQWE 300 MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV 360 ASGEGAEMRY EKAYSVDPKS ASFIDQITFH CGVLGVGGRN NNLGMWTTTG SEGSGGLDSY 420 NDYTDEMSGT GSTNRLSFSI IVIAFMFNLI SYSFMLL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-20 | 141 | 334 | 206 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-60 | 134 | 319 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-68 | 128 | 322 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61400.1 | 0 | 2 | 452 | 21 | 469 | pectate lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB64222.1 | 0 | 1 | 452 | 1 | 450 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_566979.1 | 0 | 1 | 452 | 21 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002265853.1 | 0 | 11 | 411 | 142 | 540 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519460.1 | 0 | 2 | 457 | 20 | 479 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 54 | 394 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 54 | 394 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-17 | 85 | 319 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000001 | 147 | 294 | 138 | 299 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.0000000000003 | 132 | 392 | 78 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |