| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra007116 |
| Family | PL1 |
| Protein Properties | Length: 491 Molecular Weight: 52134.8 Isoelectric Point: 7.2238 |
| Chromosome | Chromosome/Scaffold: 09 Start: 27413034 End: 27416377 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 136 | 338 | 0 |
| EPLWIVFSSNMLIRLRHELIINSYKTIDGRGSAVHITGNGCLTVQYVQHVIIHNVHIYDCKPSGGAVVAATPTKSGRRGRSDGDGISIFGAQKIWIDHCS MSHCTDGLIDAVMGSTAITISNNYFAHHDEVMLLGHDDSYGPDTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTSWKMYAIGGSGNPTINSQGNR YIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 491 Download |
| MLLPHFSTTI FLLCLFFFFT LLQATNLTLT LPHQHPSPDS VALHVLSSIN ASLSRRQLSS 60 SSSSTCRTGN PIDDCWRCTS SDWSSNRQRL ADCSIGFGRG TLGGKNGKIY VVTDSSDNNP 120 SNPTPGTLRY AVIQEEPLWI VFSSNMLIRL RHELIINSYK TIDGRGSAVH ITGNGCLTVQ 180 YVQHVIIHNV HIYDCKPSGG AVVAATPTKS GRRGRSDGDG ISIFGAQKIW IDHCSMSHCT 240 DGLIDAVMGS TAITISNNYF AHHDEVMLLG HDDSYGPDTG MQVTIAFNHF GQGLVQRMPR 300 CRRGYIHVVN NDFTSWKMYA IGGSGNPTIN SQGNRYIAPS DPSAKEVTKR VDSKDDGEWS 360 NWNWRTEGDL MENGAFFVAS GGGVSALYSK ASSVEPKASA LVDQLTRNAG VFGGPRDDQG 420 QSGDSYSGYG GGGGGGGSGG GGGGSSGSDG GTSAIGGTTR GSSTSSSDDS NFFGMIFGSN 480 APPRPLRKDN * 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 5.0e-24 | 100 | 334 | 246 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-55 | 153 | 336 | 206 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-69 | 145 | 340 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAQ87025.1 | 0 | 1 | 485 | 1 | 478 | pectate lyase-like protein [Brassica napus] |
| EMBL | CAB41092.1 | 0 | 1 | 485 | 1 | 477 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_191052.2 | 0 | 1 | 485 | 1 | 480 | PMR6 (powdery mildew resistant 6); lyase/ pectate lyase [Arabidopsis thaliana] |
| RefSeq | XP_002316399.1 | 0 | 1 | 416 | 1 | 415 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002534016.1 | 0 | 2 | 485 | 1 | 464 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 70 | 411 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 70 | 411 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-19 | 90 | 337 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 0.00000000000003 | 149 | 410 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 0.00000000000003 | 149 | 410 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
