| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra007161 |
| Family | CBM43 |
| Protein Properties | Length: 454 Molecular Weight: 48526.4 Isoelectric Point: 8.8238 |
| Chromosome | Chromosome/Scaffold: 09 Start: 27641749 End: 27643731 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 369 | 452 | 6.3e-33 |
| WCVAKSEATDAQLQGNIDWVCSQGGVDCKPIQTGGACFDPSSVRSQASFVMNAYFQRNGRTDGSCNFSGTGVIVGNNPSNGACK | |||
| GH17 | 29 | 341 | 0 |
| IGVNYGTLGNLPPPTQVANFLKTQTSIDSVKIFNVNPDIIRAFAGTGISVVVTVPNGDIPALANGVQARRWVSANILPFHPQTKIKYISVGNEILLSGDD NMIKNLLPAMKNLNAALVRAGVKDVKVTTAHSLNIIAYELNGAPSSGRFRPGWDKGVLAPILAYHRQTKSPFMVNPYPYFGFDPHNVNFAIFRSPYKAVR DPLTGKVYTNMYDTLMDSTYSAMKALGYGDVDIVVGETGWPSACDAPWCSLENAAWFNLNIIKRAQGQGTPLMPNTRFETYIFGLFNEEGKPGPTAERNW GLFRSDFSPVYDV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 454 Download |
| MAKAPPSISL LLLLSAAVFL TLPAAISSIG VNYGTLGNLP PPTQVANFLK TQTSIDSVKI 60 FNVNPDIIRA FAGTGISVVV TVPNGDIPAL ANGVQARRWV SANILPFHPQ TKIKYISVGN 120 EILLSGDDNM IKNLLPAMKN LNAALVRAGV KDVKVTTAHS LNIIAYELNG APSSGRFRPG 180 WDKGVLAPIL AYHRQTKSPF MVNPYPYFGF DPHNVNFAIF RSPYKAVRDP LTGKVYTNMY 240 DTLMDSTYSA MKALGYGDVD IVVGETGWPS ACDAPWCSLE NAAWFNLNII KRAQGQGTPL 300 MPNTRFETYI FGLFNEEGKP GPTAERNWGL FRSDFSPVYD VGLLRKEQGG GGGVRPAPAL 360 PAPTAGGTWC VAKSEATDAQ LQGNIDWVCS QGGVDCKPIQ TGGACFDPSS VRSQASFVMN 420 AYFQRNGRTD GSCNFSGTGV IVGNNPSNGA CKY* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.006 | 104 | 334 | 237 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-24 | 369 | 440 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-39 | 369 | 453 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-82 | 29 | 341 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK76666.1 | 0 | 1 | 453 | 1 | 449 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
| GenBank | AAM66982.1 | 0 | 1 | 453 | 1 | 449 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_191103.1 | 0 | 1 | 453 | 1 | 449 | glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002283647.1 | 0 | 9 | 453 | 8 | 445 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002530863.1 | 0 | 12 | 453 | 10 | 456 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 0 | 28 | 331 | 1 | 303 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 3f55_C | 0 | 28 | 331 | 1 | 303 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 3f55_B | 0 | 28 | 331 | 1 | 303 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 3f55_A | 0 | 28 | 331 | 1 | 303 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 3em5_D | 0 | 28 | 331 | 1 | 303 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
