| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra007162 |
| Family | CBM43 |
| Protein Properties | Length: 451 Molecular Weight: 48670.5 Isoelectric Point: 8.6784 |
| Chromosome | Chromosome/Scaffold: 09 Start: 27650286 End: 27652310 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 368 | 447 | 1.3e-30 |
| WCVAKSEATDAQLQGNIDWVCNQGGVDCKPIQTGGSCSNPNSLRTQASFVMNAYFQKHGRTDQSCYFSGSGVIVGEQPKQ | |||
| GH17 | 28 | 340 | 0 |
| IGVNYGTLGNLPPPTQVANFLKTQTSIDSVKIFNVNPDIIRAFAGTGISLVVTVPNGDIPALANGVQARRWVAANIQPFHPQTKIKYISVGNEILLSGDD NMIKNLLPAMKNLNAALFHAGVKDIKVTTAHSLNIIAYELNGAPSSGRFRPGWDKGVLAPILAFHRETKSPFVVNPYPYFGFDPKNVNFAIFRSPYKEVR DPLTGKVYTNMYDTLMDSTYSAMKALGYSDVDIVVGETGWPSACDAPWCSPENAAWFNLNIIKRAQGQGTPLMPNRRFETYIFGLFNEEGKPGPTAERNW GLFWPDFSPVYDV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 451 Download |
| MANAPPLISL LLLSAAVFFT LPAAISSIGV NYGTLGNLPP PTQVANFLKT QTSIDSVKIF 60 NVNPDIIRAF AGTGISLVVT VPNGDIPALA NGVQARRWVA ANIQPFHPQT KIKYISVGNE 120 ILLSGDDNMI KNLLPAMKNL NAALFHAGVK DIKVTTAHSL NIIAYELNGA PSSGRFRPGW 180 DKGVLAPILA FHRETKSPFV VNPYPYFGFD PKNVNFAIFR SPYKEVRDPL TGKVYTNMYD 240 TLMDSTYSAM KALGYSDVDI VVGETGWPSA CDAPWCSPEN AAWFNLNIIK RAQGQGTPLM 300 PNRRFETYIF GLFNEEGKPG PTAERNWGLF WPDFSPVYDV GLLRNKQAGG GGGRPAPALP 360 APSGGGKWCV AKSEATDAQL QGNIDWVCNQ GGVDCKPIQT GGSCSNPNSL RTQASFVMNA 420 YFQKHGRTDQ SCYFSGSGVI VGEQPKQWCV * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 5.0e-24 | 367 | 439 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 4.0e-34 | 367 | 445 | 79 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-84 | 28 | 340 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK76666.1 | 0 | 31 | 447 | 32 | 444 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
| GenBank | AAM66982.1 | 0 | 31 | 447 | 32 | 444 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_191103.1 | 0 | 31 | 447 | 32 | 444 | glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002312098.1 | 0 | 27 | 445 | 29 | 446 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530863.1 | 0 | 11 | 447 | 10 | 451 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 0 | 27 | 333 | 1 | 306 | A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 |
| PDB | 3f55_C | 0 | 27 | 333 | 1 | 306 | A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 |
| PDB | 3f55_B | 0 | 27 | 333 | 1 | 306 | A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 |
| PDB | 3f55_A | 0 | 27 | 333 | 1 | 306 | A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 |
| PDB | 3em5_D | 0 | 27 | 333 | 1 | 306 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
