| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra007213 |
| Family | AA3 |
| Protein Properties | Length: 571 Molecular Weight: 61890.2 Isoelectric Point: 5.9053 |
| Chromosome | Chromosome/Scaffold: 09 Start: 28025746 End: 28028641 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 44 | 568 | 0 |
| SHFDYIIIGGGTAGSALAATLSQNATVLVLERGGSPYDNPAATDIGNFANTLINITDPNSWSQLFISEDGVFNTRARVLGGGTVLNAGFYSRWEDEFVAE TGWVREEVEAAYEWVEKKLVFEPHIKGWQTAFIDGLLEAGVVPYNGFTYEHVHGTKVGGTIFDPDGHRHTAADLLEYANPNTIAVYLHASVHKILFTTKG NSRPKAYGVIFQDANGVFHTAELTVQDARSEVILSAGAIASPQLLMLSGVGPAAHLAAHGVNPIILDHPMVGQGMGDNPMHPVFIPSPKPVEVSLVQVVG IPNFSSYIEGGSGLSLSISLTRTFFNGVLDLLNKLKFPSQSISNLLKSLDLGLNVTTQAGVIIQKVSGPLSRGHLELRNTNPDDNPSVTFNYYQDPEDLN NCVKGLSAIINVIDSKGYSSYKYPGVNGRGLLNLILALPINLRPRHITSTSDLKQYCMDTTMTIYHYHGGCQVGNVVDNDYKVLGVDALRVIDASTFLKS PGTNPQATIMMLGRYMGQKILRERE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 571 Download |
| MDLYNSPLFR LILVATFIFH DLCSSDEAGY YSFLKDATSG PTLSHFDYII IGGGTAGSAL 60 AATLSQNATV LVLERGGSPY DNPAATDIGN FANTLINITD PNSWSQLFIS EDGVFNTRAR 120 VLGGGTVLNA GFYSRWEDEF VAETGWVREE VEAAYEWVEK KLVFEPHIKG WQTAFIDGLL 180 EAGVVPYNGF TYEHVHGTKV GGTIFDPDGH RHTAADLLEY ANPNTIAVYL HASVHKILFT 240 TKGNSRPKAY GVIFQDANGV FHTAELTVQD ARSEVILSAG AIASPQLLML SGVGPAAHLA 300 AHGVNPIILD HPMVGQGMGD NPMHPVFIPS PKPVEVSLVQ VVGIPNFSSY IEGGSGLSLS 360 ISLTRTFFNG VLDLLNKLKF PSQSISNLLK SLDLGLNVTT QAGVIIQKVS GPLSRGHLEL 420 RNTNPDDNPS VTFNYYQDPE DLNNCVKGLS AIINVIDSKG YSSYKYPGVN GRGLLNLILA 480 LPINLRPRHI TSTSDLKQYC MDTTMTIYHY HGGCQVGNVV DNDYKVLGVD ALRVIDASTF 540 LKSPGTNPQA TIMMLGRYMG QKILREREAF * 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 5.0e-12 | 412 | 564 | 161 | + choline dehydrogenase; Validated | ||
| PRK02106 | PRK02106 | 2.0e-20 | 42 | 320 | 331 | + choline dehydrogenase; Validated | ||
| pfam05199 | GMC_oxred_C | 1.0e-25 | 412 | 556 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| COG2303 | BetA | 1.0e-34 | 45 | 569 | 588 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PLN02785 | PLN02785 | 0 | 31 | 567 | 554 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB11043.1 | 0 | 8 | 557 | 8 | 563 | mandelonitrile lyase-like protein [Arabidopsis thaliana] |
| EMBL | CAB87405.1 | 0 | 1 | 557 | 1 | 557 | ADHESION OF CALYX EDGES-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001119417.1 | 0 | 34 | 570 | 1 | 546 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| RefSeq | NP_200008.1 | 0 | 8 | 570 | 8 | 579 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567032.1 | 0 | 1 | 570 | 1 | 570 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ju2_B | 0 | 24 | 569 | 5 | 519 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 1ju2_A | 0 | 24 | 569 | 5 | 519 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdp_B | 0 | 24 | 569 | 5 | 519 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdp_A | 0 | 24 | 569 | 5 | 519 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdn_B | 0 | 24 | 569 | 5 | 519 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
| suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
