| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra007235 |
| Family | GH27 |
| Protein Properties | Length: 430 Molecular Weight: 47604.9 Isoelectric Point: 4.7581 |
| Chromosome | Chromosome/Scaffold: 09 Start: 28139294 End: 28141649 |
| Description | Melibiase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH27 | 44 | 158 | 3.3e-33 |
| SIYDTSMYGRLQLNNGLARTPQMGWNSWNFFACNINETVIKETADALVSSGLADLGYIHVNIDDCWSNLLRDSKGQLVPHPETFPSGIKLLADYVHSKGL KLGIYSDAGVFTCQV | |||
| GH27 | 151 | 360 | 0 |
| AGVFTCQVRPGSLFHEKDDADIFASWGVDYLKYDNCFNLGIKPIERYPPMRDALNATGRSIFYSLCEWGVDDPALWAKEVGNSWRTTDDINDTWASMTAI ADLNNKWASYAGPGGWNDPDMLEVGNGGMTYEEYRGHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGRKIQANGEDDCQQVWSGP LTGDRMVVAL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 430 Download |
| MKLLLVVLFS LSVLVSQTVG GRVKAPLLRQ SNTNGLVFSK SFNSIYDTSM YGRLQLNNGL 60 ARTPQMGWNS WNFFACNINE TVIKETADAL VSSGLADLGY IHVNIDDCWS NLLRDSKGQL 120 VPHPETFPSG IKLLADYVHS KGLKLGIYSD AGVFTCQVRP GSLFHEKDDA DIFASWGVDY 180 LKYDNCFNLG IKPIERYPPM RDALNATGRS IFYSLCEWGV DDPALWAKEV GNSWRTTDDI 240 NDTWASMTAI ADLNNKWASY AGPGGWNDPD MLEVGNGGMT YEEYRGHFSI WALMKAPLLI 300 GCDVRNMTAE TFEILSNKEV IAVNQDPLGV QGRKIQANGE DDCQQVWSGP LTGDRMVVAL 360 WNRCSKPATI TASWDMIGLE STVSVSVRDL WQHKDITDNA SVSFEAQVEA HDCHMYILTP 420 QAVVSRSDV* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02065 | Melibiase | 1.0e-25 | 34 | 301 | 336 | + Melibiase. | ||
| PLN03231 | PLN03231 | 1.0e-26 | 64 | 329 | 352 | + putative alpha-galactosidase; Provisional | ||
| PLN02692 | PLN02692 | 7.0e-179 | 47 | 420 | 375 | + alpha-galactosidase | ||
| PLN02229 | PLN02229 | 0 | 17 | 429 | 413 | + alpha-galactosidase | ||
| PLN02808 | PLN02808 | 0 | 53 | 421 | 370 | + alpha-galactosidase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB87430.1 | 0 | 3 | 429 | 10 | 434 | alpha-galactosidase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_191190.2 | 0 | 3 | 429 | 13 | 437 | alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative [Arabidopsis thaliana] |
| RefSeq | NP_974447.1 | 0 | 3 | 429 | 13 | 413 | alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002279730.1 | 0 | 6 | 429 | 8 | 427 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002325481.1 | 0 | 41 | 420 | 1 | 380 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1uas_A | 0 | 56 | 420 | 1 | 361 | A Chain A, Crystal Structure Of Rice Alpha-Galactosidase |
| PDB | 3a5v_A | 0 | 57 | 425 | 2 | 397 | A Chain A, Crystal Structure Of Alpha-Galactosidase I From Mortierella Vinacea |
| PDB | 1ktc_A | 0 | 56 | 424 | 1 | 390 | A Chain A, Crystal Structure Of Alpha-Galactosidase I From Mortierella Vinacea |
| PDB | 1ktb_A | 0 | 56 | 424 | 1 | 390 | A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase |
| PDB | 3lrl_A | 0 | 58 | 403 | 24 | 407 | A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| melibiose degradation | ALPHAGALACTOSID-RXN | EC-3.2.1.22 | α-galactosidase |
| stachyose degradation | RXN-11501 | EC-3.2.1.22 | α-galactosidase |
