y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra007332 |
Family | GH28 |
Protein Properties | Length: 433 Molecular Weight: 46898.5 Isoelectric Point: 7.4967 |
Chromosome | Chromosome/Scaffold: 09 Start: 28644566 End: 28646811 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 92 | 420 | 0 |
KKACSTKEVTSFLVPKGKTYLLKSTQFRGPCKSLRSFQILGTLSASTKRSDYNKDKNHWLILEHVNNLSVDGGSEGTVDGNGKIWWQNSCKIDRSKPCTK APTALTFYNLMNLNVNNLRVRNAQQIQISVEKCNNVNIKNVEITAPGDSPNTDGIHITNTQNIRVSNSHIGTGDDCISIEDGSQNVQINDLTCGPGHGIS IGSLGDDNSKAYVSGVNVDGAKLTETDNGVRIKTYQGGSGTAKNIKFQNIRMQNVKNPIIIDQNYCDKDKCEQQDSAVQVDNVVYRNISGTSATDVAITF DCSEKYTCKGIVLDNVNIKGGTASCKNAN |
Full Sequence |
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Protein Sequence Length: 433 Download |
MARCCVPLAI FLGVLLMLSW CEALSSNVDD GYGHEDGRYE SDSLIKLNND DVLTLKSSDK 60 PTPESSTVSV SDFGAKGDGK TDDTQAFKKA WKKACSTKEV TSFLVPKGKT YLLKSTQFRG 120 PCKSLRSFQI LGTLSASTKR SDYNKDKNHW LILEHVNNLS VDGGSEGTVD GNGKIWWQNS 180 CKIDRSKPCT KAPTALTFYN LMNLNVNNLR VRNAQQIQIS VEKCNNVNIK NVEITAPGDS 240 PNTDGIHITN TQNIRVSNSH IGTGDDCISI EDGSQNVQIN DLTCGPGHGI SIGSLGDDNS 300 KAYVSGVNVD GAKLTETDNG VRIKTYQGGS GTAKNIKFQN IRMQNVKNPI IIDQNYCDKD 360 KCEQQDSAVQ VDNVVYRNIS GTSATDVAIT FDCSEKYTCK GIVLDNVNIK GGTASCKNAN 420 VKNQGYVSPQ CS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-82 | 65 | 421 | 361 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-97 | 65 | 429 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 4.0e-108 | 95 | 422 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-121 | 70 | 429 | 368 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 0 | 1 | 432 | 434 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA65072.1 | 0 | 1 | 431 | 1 | 432 | polygalacturonase [Brassica napus] |
EMBL | CAA90272.1 | 0 | 1 | 431 | 1 | 432 | Polygalacturonase [Brassica napus] |
EMBL | CAC05657.1 | 0 | 1 | 431 | 1 | 431 | endopolygalacturonase [Brassica napus] |
EMBL | CAD21651.2 | 0 | 1 | 431 | 1 | 432 | endo polygalacturonase [Brassica rapa subsp. rapa] |
RefSeq | NP_191310.1 | 0 | 1 | 432 | 1 | 431 | ADPG1; polygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 7e-26 | 94 | 416 | 17 | 340 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 1e-22 | 81 | 421 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-22 | 81 | 421 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-22 | 81 | 421 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-22 | 81 | 421 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |