| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra007343 |
| Family | GT47 |
| Protein Properties | Length: 795 Molecular Weight: 90690.3 Isoelectric Point: 6.2327 |
| Chromosome | Chromosome/Scaffold: 09 Start: 28708181 End: 28712451 |
| Description | exostosin family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT47 | 346 | 699 | 0 |
| KKRPLIYVYDLPPDFNSLLIEGRHFKLECVNRIYDDRNATVWTDYLYGSQMAFYESILATAHRTLNGEEADFFFVPVLDSCIINRADDSPHLSMQNHTGL RSSLTLEFYKRAYEHIVEKYSYWNRSSGRDHIWFFSWDEGACYAPKEIWNSMMLVHWGNTNSKHKNSTTAYWGDNWDEISQERRGDHPCFDPSKDLVVPA WKVPDPHSMRVNYWERPREKRKTLFYFNGNLGPAYEKGRPEDSYSMGIRQKLAEEFGSSPNKEGKLGKQHADDVIVTPSRSDNYHNDIASSIFCGVFPGD GWSGRMEDSILQGCVPVIIQDGIYLPYENMLNYESFAVRVSEDDIPNLINTLRG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 795 Download |
| MFSNQKWKCT WSQIATLASV IVLVSLVHLF LGPVVPSFDS VSVRQAQSLC GPVNESITQV 60 TKDSSEPVAV VVAFDRRFPA DLHGAVVYRN ASWKSEIGQW LSSCDAVAKE VDIIEPIGGR 120 KCLNECSGQG VCNHEFGICR CFHGFTGEDC SQKQQLECNY EKTPEMPYGR WVVSICSRHC 180 DTTRAMCFCG EGTKYPNRPA PESCGFQINA PVNPGEPKMT DWSKPDLDIL TTNSSKQGWC 240 NVDPEDAYAM KVKIKEECDC KYDCLWGRFC EVPVQCTCVN QCSGHGKCRG GFCQCDKGWF 300 GTDCSIPSTL SSFGEWPQWL RPAHLEVPSG KDVPGNLINL SAVVKKKRPL IYVYDLPPDF 360 NSLLIEGRHF KLECVNRIYD DRNATVWTDY LYGSQMAFYE SILATAHRTL NGEEADFFFV 420 PVLDSCIINR ADDSPHLSMQ NHTGLRSSLT LEFYKRAYEH IVEKYSYWNR SSGRDHIWFF 480 SWDEGACYAP KEIWNSMMLV HWGNTNSKHK NSTTAYWGDN WDEISQERRG DHPCFDPSKD 540 LVVPAWKVPD PHSMRVNYWE RPREKRKTLF YFNGNLGPAY EKGRPEDSYS MGIRQKLAEE 600 FGSSPNKEGK LGKQHADDVI VTPSRSDNYH NDIASSIFCG VFPGDGWSGR MEDSILQGCV 660 PVIIQDGIYL PYENMLNYES FAVRVSEDDI PNLINTLRGF NETEIQFRLA NVKKLWQRFL 720 FRDSILLEAE RQKASYGHEE DWAVQFSKLK HDDVFATFIQ TLHYKLHNDP WRQEQVVNRT 780 KDYGLPQECL HKTS* 840 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07974 | EGF_2 | 0.0001 | 276 | 304 | 31 | + EGF-like domain. This family contains EGF domains found in a variety of extracellular proteins. | ||
| pfam03016 | Exostosin | 5.0e-68 | 345 | 700 | 359 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41192.1 | 0 | 1 | 794 | 1 | 736 | putative protein [Arabidopsis thaliana] |
| EMBL | CBI29877.1 | 0 | 2 | 793 | 31 | 821 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_191322.3 | 0 | 1 | 794 | 1 | 793 | exostosin family protein [Arabidopsis thaliana] |
| RefSeq | NP_974452.1 | 0 | 1 | 794 | 1 | 791 | exostosin family protein [Arabidopsis thaliana] |
| RefSeq | XP_002277596.1 | 0 | 2 | 793 | 3 | 793 | PREDICTED: hypothetical protein [Vitis vinifera] |
