| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra007483 |
| Family | GH28 |
| Protein Properties | Length: 389 Molecular Weight: 41017.8 Isoelectric Point: 9.0947 |
| Chromosome | Chromosome/Scaffold: 09 Start: 29421430 End: 29423655 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 47 | 374 | 0 |
| AKACASVKAVTISIPKGRFLLRSIVFDGAKCKRKSVTFRIQGTLVAPSDYRVIGNGNYWIFFQHLDGLSVYGGVLDAQGASLWSCKKSGKNCPSGATSIG FQSSSNVVISGLTSLNSQMFHVVINGCRNVNIQGVKVSADGNSPNNDGIHVQSSSIVSILNSKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGK ESVEAGVQNVTVKTATFTGTENGVRIKSWARPSNGFAKNIRFQHCVMNNVQNPIVIDQNYCPGNENCPNQVSGIKISDVMFFDIHGTSATQVGVKFDCSS KKPCTGIRLQDVKLTYRNKPAMADCSHA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 389 Download |
| MPSPVLIILL LTLSISLSSA QTYNILSYGA KPDGKTDSTK ALAAVWAKAC ASVKAVTISI 60 PKGRFLLRSI VFDGAKCKRK SVTFRIQGTL VAPSDYRVIG NGNYWIFFQH LDGLSVYGGV 120 LDAQGASLWS CKKSGKNCPS GATSIGFQSS SNVVISGLTS LNSQMFHVVI NGCRNVNIQG 180 VKVSADGNSP NNDGIHVQSS SIVSILNSKI STGDDCVSIG PGTNGLWIEN VACGPGHGIS 240 IGSLGKESVE AGVQNVTVKT ATFTGTENGV RIKSWARPSN GFAKNIRFQH CVMNNVQNPI 300 VIDQNYCPGN ENCPNQVSGI KISDVMFFDI HGTSATQVGV KFDCSSKKPC TGIRLQDVKL 360 TYRNKPAMAD CSHAGGTEAG FQQPNSCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-76 | 22 | 384 | 373 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-83 | 28 | 388 | 369 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-85 | 57 | 367 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-98 | 22 | 387 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 7.0e-136 | 23 | 388 | 367 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28534.1 | 0 | 6 | 388 | 4 | 384 | unknown [Arabidopsis thaliana] |
| EMBL | CAB75804.1 | 0 | 20 | 388 | 20 | 383 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_181915.1 | 0 | 6 | 388 | 4 | 384 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_191544.2 | 0 | 20 | 388 | 20 | 388 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002529090.1 | 0 | 6 | 388 | 12 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-20 | 116 | 361 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1czf_B | 2e-17 | 50 | 371 | 45 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 2e-17 | 50 | 371 | 45 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1hg8_A | 0.00000000000003 | 44 | 361 | 12 | 332 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1ib4_B | 0.00000000000007 | 148 | 333 | 110 | 294 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
