| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra007609 |
| Family | GH28 |
| Protein Properties | Length: 471 Molecular Weight: 51391.4 Isoelectric Point: 6.3708 |
| Chromosome | Chromosome/Scaffold: 09 Start: 30010315 End: 30012630 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 75 | 424 | 0 |
| SSDGGAQLFVPAGKWLTGSFSLTSHFTLFLHKDATLLAAQDLEEYLVLKALPSYGRGRDAAGGRFASLVFGTNLSDVIITGNNGTIDGQGSFWWQKFHGG KLKYTRPYLIELMFSDTIQISNITLIDSPSWNIHPVYSSNIIVKGVTIIAPVKSPNTDGINPDSCTNTRIEDCYIISGDDCVAVKSGWDEYGISFGMPTK HLIIRRLTCISPYSAAIALGSEMSGGIEDVRAEEITAYQTESGVRIKTAVGRGAFVRNVYVRGMRLHTMKWVFWMTGNYKAHADSHYDPHALPEITGINY RDIVAENVSMAGRLEGISGDPFKGICISNATISMAVKHKKVMWMCSDVEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 471 Download |
| MKNILSCIVT IITLSFLTTN AQGRKVSQSY ETYEYTAITC RSHSASITDF GGVGDGKTLN 60 TKAFQSAVDH LSQYSSDGGA QLFVPAGKWL TGSFSLTSHF TLFLHKDATL LAAQDLEEYL 120 VLKALPSYGR GRDAAGGRFA SLVFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR 180 PYLIELMFSD TIQISNITLI DSPSWNIHPV YSSNIIVKGV TIIAPVKSPN TDGINPDSCT 240 NTRIEDCYII SGDDCVAVKS GWDEYGISFG MPTKHLIIRR LTCISPYSAA IALGSEMSGG 300 IEDVRAEEIT AYQTESGVRI KTAVGRGAFV RNVYVRGMRL HTMKWVFWMT GNYKAHADSH 360 YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFKGIC ISNATISMAV KHKKVMWMCS 420 DVEGVTSGVD PKPCDLLDGK QEKMDGGCEF PSDVLEIDNV ELKSCSYQMN * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 3.0e-19 | 46 | 430 | 403 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 7.0e-24 | 44 | 406 | 382 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-24 | 145 | 333 | 194 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 5.0e-25 | 42 | 344 | 305 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 2.0e-51 | 45 | 347 | 327 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A7PZL3 | 0 | 31 | 470 | 49 | 488 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
| GenBank | AAP33475.1 | 0 | 1 | 470 | 1 | 473 | polygalacturonase-like protein [Fragaria x ananassa] |
| RefSeq | NP_191708.1 | 0 | 1 | 470 | 1 | 476 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002277736.1 | 0 | 31 | 470 | 37 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301370.1 | 0 | 21 | 470 | 20 | 468 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4.2039e-45 | 43 | 409 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4.2039e-45 | 43 | 409 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4.2039e-45 | 43 | 409 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4.2039e-45 | 43 | 409 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 2e-16 | 17 | 384 | 128 | 529 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
