| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra007626 |
| Family | GH28 |
| Protein Properties | Length: 582 Molecular Weight: 67296 Isoelectric Point: 8.8468 |
| Chromosome | Chromosome/Scaffold: 09 Start: 30103800 End: 30108561 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 185 | 262 | 9.7e-23 |
| ELPGKRHRSLLYGQILTDVVITGDNGTIDGQGSKWWDWFRNGELNYTRPHLVELMNSTGLIISNLTFLNSPFWNINPS | |||
| Full Sequence |
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| Protein Sequence Length: 582 Download |
| MILFGDISLL MRFRRALGVR LFSLREYHSP VLEFLVLWSY CIDGLYLHML QVDIIIQGSC 60 LVQIRNRQKI PPWPGDFKRW MRLIHEELET WCIIIGLYFW WFMSYRQLLL ILFILKAFLQ 120 DSVVLMIKNK IQRSEWGSVR FKAWSLKISQ QQNGLKLLLY WSQSKRISTP WTECVSLPSY 180 GRGRELPGKR HRSLLYGQIL TDVVITGDNG TIDGQGSKWW DWFRNGELNY TRPHLVELMN 240 STGLIISNLT FLNSPFWNIN PSIEVEERVD ECSVDDLLSF ISGEQIGLIT ERFVKGEFKE 300 GSTPLSQAVS LRDQFRVLVV KTCGDVENLN PRWESLEERL ETLVMEYEHW NDYKKTKTTL 360 ANLCLSKHFD IREVKMIHAL GVKCDIINNP WAQSRLSTLY AYSPFIGYVL SLECVSRNKT 420 MKKHNPYRFY NGLLAAQGFS QSPEAAEVLL REMVQLRLAP TKVTFLAESS RQRDKFRVFV 480 VKVYAADVEN LEERLETLVM EHESLEEYNE PKNKTKKKKI DTHRLYNALL SANGYSESPE 540 AAEVLLKGMV GCGFAPTDIT FRVMMKALGN SGKSGLAPGY K* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13041 | PPR_2 | 0.003 | 526 | 570 | 47 | + PPR repeat family. This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. | ||
| PLN03003 | PLN03003 | 0.002 | 199 | 260 | 65 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-6 | 201 | 260 | 61 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB71871.1 | 5.60519e-45 | 171 | 261 | 116 | 206 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567126.1 | 5.60519e-45 | 168 | 261 | 114 | 207 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002301554.1 | 9.99995e-41 | 168 | 261 | 114 | 207 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002320934.1 | 7.00005e-41 | 168 | 261 | 107 | 200 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002535132.1 | 4e-39 | 168 | 261 | 124 | 217 | Polygalacturonase precursor, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES955355 | 85 | 177 | 261 | 0 |
| DY019968 | 91 | 171 | 261 | 0 |
| EY905190 | 94 | 168 | 261 | 1.4013e-45 |
| EV199529 | 91 | 171 | 261 | 1.4013e-45 |
| EV199361 | 91 | 171 | 261 | 2.8026e-45 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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