| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra007662 |
| Family | GH28 |
| Protein Properties | Length: 461 Molecular Weight: 50712.2 Isoelectric Point: 6.0887 |
| Chromosome | Chromosome/Scaffold: 09 Start: 30313102 End: 30315153 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 77 | 411 | 0 |
| SDKGGAKLFVPAGQWLTGSFDLISHLTLWLDKGATILGSTARRELPGRRHRSLIYGQNLTDVVITGENGTIDGQGSIWWDWFRNGELNYTRPHLVELMNS TGLIISNLTFLNSPFWNIHPVYCRDVVVKNLTILAPLDSPNTDGVDPDSSTNVCIEDCYIVTGDDLVSIKSGWDEYGISYARPSSKIKINRLTGQTTSSS GIAIGSEMSGGVSDIYIKDLHLFNSNTGIRIKTSPGRGGYVRNVHVSNVKLDNVKKAIRFTGKYGEHPDGNFDTKALPAIEKITFENVSGEDIGVAGLLE GIEGDEFKNICFLNVTLTVKKNSKKAPWRCSNVRG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 461 Download |
| MLVFDVGYLQ LSYVLLVHAF YGAWCSVGGS LHCEYSNSLT LHRPHSVSIT EFGAVGDGVT 60 LNTKAFQNAL FYLNTFSDKG GAKLFVPAGQ WLTGSFDLIS HLTLWLDKGA TILGSTARRE 120 LPGRRHRSLI YGQNLTDVVI TGENGTIDGQ GSIWWDWFRN GELNYTRPHL VELMNSTGLI 180 ISNLTFLNSP FWNIHPVYCR DVVVKNLTIL APLDSPNTDG VDPDSSTNVC IEDCYIVTGD 240 DLVSIKSGWD EYGISYARPS SKIKINRLTG QTTSSSGIAI GSEMSGGVSD IYIKDLHLFN 300 SNTGIRIKTS PGRGGYVRNV HVSNVKLDNV KKAIRFTGKY GEHPDGNFDT KALPAIEKIT 360 FENVSGEDIG VAGLLEGIEG DEFKNICFLN VTLTVKKNSK KAPWRCSNVR GYSQWVSPEI 420 TCDSFEESIF PEHSSDCFGL SENNVETSSG LSRSPWLLFW * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-30 | 9 | 410 | 423 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 5.0e-33 | 40 | 366 | 341 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 7.0e-35 | 45 | 434 | 411 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-40 | 130 | 409 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 9.0e-60 | 47 | 331 | 323 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB71871.1 | 0 | 11 | 460 | 7 | 470 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567126.1 | 0 | 11 | 460 | 7 | 471 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002273855.1 | 0 | 20 | 460 | 68 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301554.1 | 0 | 26 | 438 | 23 | 444 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002535132.1 | 0 | 27 | 460 | 34 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2.00386e-43 | 45 | 388 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2.00386e-43 | 45 | 388 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2.00386e-43 | 45 | 388 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2.00386e-43 | 45 | 388 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-24 | 91 | 409 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX074033 | 285 | 164 | 448 | 0 |
| DK475172 | 249 | 11 | 243 | 0 |
| EV199529 | 243 | 38 | 265 | 0 |
| EV199361 | 242 | 38 | 264 | 0 |
| GO869614 | 320 | 24 | 328 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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