| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra007665 |
| Family | CE8 |
| Protein Properties | Length: 573 Molecular Weight: 61800.4 Isoelectric Point: 7.4729 |
| Chromosome | Chromosome/Scaffold: 09 Start: 30324629 End: 30326484 |
| Description | VANGUARD 1 homolog 2 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 262 | 555 | 0 |
| VVAKDGSGQFKTISEAVKACPEKNPGRCIIYIKAGVYKEQVTIPKKVNNVFMFGDGATQTIITFDRSVGLSPGTTTSLSGTVQVESEGFMAKWIGFQNTA GPLGHQAVAFRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILCRKGSPGQTNHVTADGNEKGKAVKIGIVLHNCRI MADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANTAARVPWAKMAKSAAEVERFTVANWL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 573 Download |
| MLLVVGVAIG VVTFVNKGGG AGGDKTLNSH QKAVESLCAS ATDKGSCAKT LDPVKSDDPS 60 KLIKAFMLAT KDAVTKSTNF TASTEEGMGK NMNATSKAVL DYCKRVLMYA LEDLETIVEE 120 MGEDLQQSGS KMDQLKQWLT GVFNYQTDCI DDIEESELRK VMGEGIAHSK ILSSNAIDIF 180 HALTTAMSQM NVKVDDMKKG NLGETPAPDR DLLEDLDQKG LPKWHSDKDR KLMAQAGRPG 240 APADEGIGEG GGGGGKIKPT HVVAKDGSGQ FKTISEAVKA CPEKNPGRCI IYIKAGVYKE 300 QVTIPKKVNN VFMFGDGATQ TIITFDRSVG LSPGTTTSLS GTVQVESEGF MAKWIGFQNT 360 AGPLGHQAVA FRVNGDRAVI FNCRFDGYQD TLYVNNGRQF YRNIVVSGTV DFIFGKSATV 420 IQNSLILCRK GSPGQTNHVT ADGNEKGKAV KIGIVLHNCR IMADKELEAD RLTVKSYLGR 480 PWKPFATTAV IGTEIGDLIQ PTGWNEWQGE KFHLTATYVE FNNRGPGANT AARVPWAKMA 540 KSAAEVERFT VANWLTPANW IQEANVPVQL GL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02990 | PLN02990 | 6.0e-106 | 32 | 567 | 542 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02468 | PLN02468 | 3.0e-106 | 16 | 572 | 562 | + putative pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 7.0e-134 | 262 | 555 | 296 | + Pectinesterase. | ||
| PLN02745 | PLN02745 | 4.0e-138 | 32 | 572 | 554 | + Putative pectinesterase/pectinesterase inhibitor | ||
| PLN02197 | PLN02197 | 0 | 22 | 572 | 567 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAV91510.1 | 0 | 17 | 572 | 29 | 588 | VGD1-like protein 2 [Arabidopsis thaliana] |
| GenBank | ABC25451.1 | 0 | 16 | 572 | 28 | 585 | pollen development related protein [Brassica rapa subsp. chinensis] |
| RefSeq | NP_191776.1 | 0 | 17 | 572 | 29 | 588 | VGDH2 (Vanguard 1 homolog 2); enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
| Swiss-Prot | P41510 | 0 | 16 | 572 | 28 | 584 | PME_BRANA RecName: Full=Probable pectinesterase/pectinesterase inhibitor; Includes: RecName: Full=Pectinesterase inhibitor; AltName: Full=Pectin methylesterase inhibitor; Includes: RecName: Full=Pectinesterase; Short=PE; AltName: Full=Pectin methylesterase; Flags: Precursor |
| Swiss-Prot | Q42608 | 0 | 2 | 572 | 1 | 571 | PME_BRACM RecName: Full=Pectinesterase/pectinesterase inhibitor; Includes: RecName: Full=Pectinesterase inhibitor; AltName: Full=Pectin methylesterase inhibitor; Includes: RecName: Full=Pectinesterase; Short=PE; AltName: Full=Pectin methylesterase |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 257 | 572 | 5 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 262 | 572 | 6 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 7e-21 | 262 | 487 | 7 | 250 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 7e-21 | 262 | 487 | 7 | 250 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 7e-21 | 262 | 487 | 7 | 250 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CX194075 | 276 | 292 | 567 | 0 |
| GR459034 | 271 | 265 | 535 | 0 |
| GR453365 | 269 | 24 | 292 | 0 |
| GR462554 | 271 | 28 | 298 | 0 |
| DY017504 | 267 | 60 | 326 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
