| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra007909 |
| Family | CBM57 |
| Protein Properties | Length: 1014 Molecular Weight: 111047 Isoelectric Point: 7.478 |
| Chromosome | Chromosome/Scaffold: 02 Start: 11782522 End: 11788191 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM57 | 421 | 588 | 4.4e-28 |
| SINCGGPDKRSVSRALFEKDDADLGPSSFFVNAARRWAASSIGLFAGSSSNAYIASSLSQFTNTSDSELFQTARLSASSLRYYGLGLENGGYTVTLQFAE IQMEASNSWKGLGRRRFDIYVQGRLVEKDFDVLRTAGGSTNRAVHKVYKANVTENYIEVHLFWAGKGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1014 Download |
| MPRLRRSPCL LLAVLFLCIH VVRAQNRTRA TTHPDEARAL NSIFATWKIR ASNEWNISGE 60 LCSGAAIDNV SIDDGAYNPM IKCTCTFANS TCRITALKVY AIDVVGTIPD ELWTLEYLTN 120 LNLAQNFLTG PLSPAIGNLT RMEWMTFGIN ALSGPVPKEI GLLTNLKLLS ISSNNFSGSM 180 PAEIGSCTKL QQIYIDSSGL GGEIPLSFAN LVEMQQAWMM DLEFTGRIPD FIGNWTKLTT 240 LRIVGTGLSG PIPSSFSNLT SLTELRLGDI SNGSSTLEFI KNMKSLSTLV LRNNNLTGEI 300 PSDIGDYSSL QQVDLSFNKL HGPIPSSLFN LTRLTHLFLG NNTLNGSLPT QKSQSLSNID 360 VSYNNLSGIL PSWVSLPNSK FNLVANNFTL EGLDNRVLSG LNCLQKNFPC NRGKGIYYNF 420 SINCGGPDKR SVSRALFEKD DADLGPSSFF VNAARRWAAS SIGLFAGSSS NAYIASSLSQ 480 FTNTSDSELF QTARLSASSL RYYGLGLENG GYTVTLQFAE IQMEASNSWK GLGRRRFDIY 540 VQGRLVEKDF DVLRTAGGST NRAVHKVYKA NVTENYIEVH LFWAGKGTCC IPIQGAYGPI 600 ISAVSAAPDF RPTVDNKPPS KGKNKTGIIV GVIVGLGLLS ILAGLGIFII RKRRKPYTDD 660 EELLSMEIKP YTFTYSELKS ATQDFNLSNK LGEGGFGPVY KASLIPKEVA VKLLSVGSRQ 720 GKGQFVAEIV TISTVLHRNL VTLYGCCFEG DHRLLVYEYL PNGSLDQALF GDKSIHLDWS 780 TRFEICLGVA RGLVYLHEEA RVRIVHRDVK ASNILLDSEL VPKVSDFGLA KLYHDKKTHI 840 STGVAGTIGY LAPEYAMRGH LTEKTDVYAF GVVALELVSG RPNSDEVLDD DKKYLLEWAW 900 NLHEKGREVE LIDDRLSEFN VEEVKRVIGV ALLCTQASHS LRPPMSRVVA MLSGDVEVSD 960 VTSKPGYLTD WRYDDITTSS GFQTKETDTS SSKISPGNTD SLPMLGAKIN VGR* 1020 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00180 | PKc | 4.0e-46 | 691 | 877 | 192 | + Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. | ||
| cd00192 | PTKc | 4.0e-47 | 689 | 879 | 206 | + Catalytic domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. | ||
| smart00221 | STYKc | 8.0e-49 | 687 | 879 | 200 | + Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. | ||
| smart00219 | TyrKc | 4.0e-50 | 687 | 879 | 200 | + Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily. | ||
| pfam11721 | Malectin | 1.0e-54 | 418 | 604 | 189 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004672 | protein kinase activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG50909.1 | 0 | 4 | 1013 | 1020 | 2062 | AC069159_10 receptor protein kinase, putative [Arabidopsis thaliana] |
| Swiss-Prot | C0LGH3 | 0 | 1 | 1013 | 1 | 1033 | Y5614_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At1g56140; Flags: Precursor |
| RefSeq | NP_176008.4 | 0 | 21 | 1013 | 1 | 1047 | kinase [Arabidopsis thaliana] |
| RefSeq | NP_176009.1 | 0 | 1 | 1013 | 1 | 1032 | leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] |
| RefSeq | NP_564709.1 | 0 | 1 | 1013 | 1 | 1032 | leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ulz_A | 0 | 656 | 955 | 5 | 309 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
| PDB | 3uim_A | 0 | 656 | 955 | 5 | 309 | A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation |
| PDB | 3tl8_H | 0 | 656 | 955 | 13 | 317 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3tl8_G | 0 | 656 | 955 | 13 | 317 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3tl8_D | 0 | 656 | 955 | 13 | 317 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
