y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra008223 |
Family | AA1 |
Protein Properties | Length: 494 Molecular Weight: 55845.2 Isoelectric Point: 7.7214 |
Chromosome | Chromosome/Scaffold: 02 Start: 13913630 End: 13916292 |
Description | SKU5 similar 18 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA1 | 2 | 448 | 0 |
FPGPILKATAGDVVNVNIFNHLTEPFLMTWNGLQMRKNSWQDGVRGTNCPILPGTNWTYRFQIKDQIGSYFYFPTLLFQKAAGGYGSIRVYSPELVPVPF PRPDGEFDILIGDWFYTDYRGMRASLDNGLSLATPDGILFNGHGPEEAFFAFQPGKTYRLRISNVGLKTSLNFRIQDHDMLLVETEGSYVQKRTLSNLDI HVGQSYSVLVTAKTDPIGSHRSYYIFASTRFSNSYMTGLALIRYPNSPVDPVGPVPAAPESWDYASSVRQTLSIREDLAVGAARPNPQGSYHYGRVNVSR TIILQNDVMSSSNRLRYTVNGVSFVFPETPLKLADHFQLKNTIVPNMFPTYPSNKTPRFGTSVVDIRYRDFVHIVFENPLDESQSWHIDGYNFWVVGMGF GGWSESKRAGYNLVDAVSRSTIQVFPYSWVAILIAMDNQGMWNVRSQ |
Full Sequence |
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Protein Sequence Length: 494 Download |
MFPGPILKAT AGDVVNVNIF NHLTEPFLMT WNGLQMRKNS WQDGVRGTNC PILPGTNWTY 60 RFQIKDQIGS YFYFPTLLFQ KAAGGYGSIR VYSPELVPVP FPRPDGEFDI LIGDWFYTDY 120 RGMRASLDNG LSLATPDGIL FNGHGPEEAF FAFQPGKTYR LRISNVGLKT SLNFRIQDHD 180 MLLVETEGSY VQKRTLSNLD IHVGQSYSVL VTAKTDPIGS HRSYYIFAST RFSNSYMTGL 240 ALIRYPNSPV DPVGPVPAAP ESWDYASSVR QTLSIREDLA VGAARPNPQG SYHYGRVNVS 300 RTIILQNDVM SSSNRLRYTV NGVSFVFPET PLKLADHFQL KNTIVPNMFP TYPSNKTPRF 360 GTSVVDIRYR DFVHIVFENP LDESQSWHID GYNFWVVGMG FGGWSESKRA GYNLVDAVSR 420 STIQVFPYSW VAILIAMDNQ GMWNVRSQKA EQWYLGEELY FRVKGDGQED PRNIPTRDES 480 PIPENFLRCG RVL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02991 | PLN02991 | 4.0e-167 | 2 | 491 | 490 | + oxidoreductase | ||
PLN02792 | PLN02792 | 2.0e-168 | 2 | 491 | 493 | + oxidoreductase | ||
PLN02835 | PLN02835 | 5.0e-178 | 2 | 493 | 492 | + oxidoreductase | ||
PLN02168 | PLN02168 | 0 | 1 | 493 | 493 | + copper ion binding / pectinesterase | ||
PLN02354 | PLN02354 | 0 | 1 | 492 | 503 | + copper ion binding / oxidoreductase |
Gene Ontology | |
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GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF26773.2 | 0 | 1 | 492 | 53 | 510 | AC007396_22 T4O12.2 [Arabidopsis thaliana] |
GenBank | AAF87105.1 | 0 | 1 | 492 | 53 | 497 | AC006434_1 F10A5.2 [Arabidopsis thaliana] |
GenBank | AAM67203.1 | 0 | 1 | 492 | 53 | 544 | pectinesterase, putative [Arabidopsis thaliana] |
GenBank | ABK28469.1 | 0 | 1 | 492 | 53 | 543 | unknown [Arabidopsis thaliana] |
RefSeq | NP_177707.1 | 0 | 1 | 492 | 53 | 544 | sks18 (SKU5 Similar 18); copper ion binding / pectinesterase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 0 | 2 | 477 | 31 | 534 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1asq_A | 0 | 2 | 477 | 31 | 534 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1asp_B | 0 | 2 | 477 | 31 | 534 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1asp_A | 0 | 2 | 477 | 31 | 534 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1aso_B | 0 | 2 | 477 | 31 | 534 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX768912 | 233 | 262 | 494 | 0 |
EY902768 | 214 | 1 | 214 | 0 |
FD943153 | 214 | 281 | 494 | 0 |
FD545629 | 216 | 279 | 494 | 0 |
EY917523 | 205 | 289 | 493 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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