PlantCAZyme

Basic Information
Species	Brassica rapa
Cazyme ID	Bra008223
Family	AA1
Protein Properties	Length: 494 Molecular Weight: 55845.2 Isoelectric Point: 7.7214
Chromosome	Chromosome/Scaffold: 02 Start: 13913630 End: 13916292
Description	SKU5 similar 18
View CDS

External Links
NCBI Taxonomy
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
AA1	2	448	0
FPGPILKATAGDVVNVNIFNHLTEPFLMTWNGLQMRKNSWQDGVRGTNCPILPGTNWTYRFQIKDQIGSYFYFPTLLFQKAAGGYGSIRVYSPELVPVPF PRPDGEFDILIGDWFYTDYRGMRASLDNGLSLATPDGILFNGHGPEEAFFAFQPGKTYRLRISNVGLKTSLNFRIQDHDMLLVETEGSYVQKRTLSNLDI HVGQSYSVLVTAKTDPIGSHRSYYIFASTRFSNSYMTGLALIRYPNSPVDPVGPVPAAPESWDYASSVRQTLSIREDLAVGAARPNPQGSYHYGRVNVSR TIILQNDVMSSSNRLRYTVNGVSFVFPETPLKLADHFQLKNTIVPNMFPTYPSNKTPRFGTSVVDIRYRDFVHIVFENPLDESQSWHIDGYNFWVVGMGF GGWSESKRAGYNLVDAVSRSTIQVFPYSWVAILIAMDNQGMWNVRSQ

Full Sequence
Protein Sequence Length: 494 Download
MFPGPILKAT AGDVVNVNIF NHLTEPFLMT WNGLQMRKNS WQDGVRGTNC PILPGTNWTY 60 RFQIKDQIGS YFYFPTLLFQ KAAGGYGSIR VYSPELVPVP FPRPDGEFDI LIGDWFYTDY 120 RGMRASLDNG LSLATPDGIL FNGHGPEEAF FAFQPGKTYR LRISNVGLKT SLNFRIQDHD 180 MLLVETEGSY VQKRTLSNLD IHVGQSYSVL VTAKTDPIGS HRSYYIFAST RFSNSYMTGL 240 ALIRYPNSPV DPVGPVPAAP ESWDYASSVR QTLSIREDLA VGAARPNPQG SYHYGRVNVS 300 RTIILQNDVM SSSNRLRYTV NGVSFVFPET PLKLADHFQL KNTIVPNMFP TYPSNKTPRF 360 GTSVVDIRYR DFVHIVFENP LDESQSWHID GYNFWVVGMG FGGWSESKRA GYNLVDAVSR 420 STIQVFPYSW VAILIAMDNQ GMWNVRSQKA EQWYLGEELY FRVKGDGQED PRNIPTRDES 480 PIPENFLRCG RVL* 540

Full Sequence

Protein Sequence Length: 494 Download

MFPGPILKAT AGDVVNVNIF NHLTEPFLMT WNGLQMRKNS WQDGVRGTNC PILPGTNWTY    60
RFQIKDQIGS YFYFPTLLFQ KAAGGYGSIR VYSPELVPVP FPRPDGEFDI LIGDWFYTDY    120
RGMRASLDNG LSLATPDGIL FNGHGPEEAF FAFQPGKTYR LRISNVGLKT SLNFRIQDHD    180
MLLVETEGSY VQKRTLSNLD IHVGQSYSVL VTAKTDPIGS HRSYYIFAST RFSNSYMTGL    240
ALIRYPNSPV DPVGPVPAAP ESWDYASSVR QTLSIREDLA VGAARPNPQG SYHYGRVNVS    300
RTIILQNDVM SSSNRLRYTV NGVSFVFPET PLKLADHFQL KNTIVPNMFP TYPSNKTPRF    360
GTSVVDIRYR DFVHIVFENP LDESQSWHID GYNFWVVGMG FGGWSESKRA GYNLVDAVSR    420
STIQVFPYSW VAILIAMDNQ GMWNVRSQKA EQWYLGEELY FRVKGDGQED PRNIPTRDES    480
PIPENFLRCG RVL*                                                      540

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
PLN02991	PLN02991	4.0e-167	2	491	490	+ oxidoreductase
PLN02792	PLN02792	2.0e-168	2	491	493	+ oxidoreductase
PLN02835	PLN02835	5.0e-178	2	493	492	+ oxidoreductase
PLN02168	PLN02168	0	1	493	493	+ copper ion binding / pectinesterase
PLN02354	PLN02354	0	1	492	503	+ copper ion binding / oxidoreductase

Gene Ontology
GO Term	Description
GO:0005507	copper ion binding
GO:0016491	oxidoreductase activity
GO:0055114	oxidation-reduction process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	AAF26773.2	0	1	492	53	510	AC007396_22 T4O12.2 [Arabidopsis thaliana]
GenBank	AAF87105.1	0	1	492	53	497	AC006434_1 F10A5.2 [Arabidopsis thaliana]
GenBank	AAM67203.1	0	1	492	53	544	pectinesterase, putative [Arabidopsis thaliana]
GenBank	ABK28469.1	0	1	492	53	543	unknown [Arabidopsis thaliana]
RefSeq	NP_177707.1	0	1	492	53	544	sks18 (SKU5 Similar 18); copper ion binding / pectinesterase [Arabidopsis thaliana]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1asq_B	0	2	477	31	534	A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases
PDB	1asq_A	0	2	477	31	534	A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases
PDB	1asp_B	0	2	477	31	534	A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases
PDB	1asp_A	0	2	477	31	534	A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases
PDB	1aso_B	0	2	477	31	534	A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases

EST Download unfiltered results here

Hit	Length	Start	End	EValue
EX768912	233	262	494	0
EY902768	214	1	214	0
FD943153	214	281	494	0
FD545629	216	279	494	0
EY917523	205	289	493	0

Orthologous Group
Species	ID
Aquilegia coerulea	Aquca_033_00145.1	Aquca_043_00093.1	Aquca_007_00456.1	Aquca_007_00455.1	Aquca_010_00308.1
	Aquca_007_00844.1	Aquca_013_00695.2	Aquca_013_00695.1	Aquca_085_00021.1	Aquca_007_00455.2
	Aquca_033_00145.2	Aquca_003_00198.1	Aquca_007_00844.2	Aquca_003_00196.1	Aquca_003_00195.2
	Aquca_003_00195.1	Aquca_013_00695.3	Aquca_013_00695.5	Aquca_013_00695.4	Aquca_108_00035.1
	Aquca_007_00844.3	Aquca_108_00035.2	Aquca_013_00695.6	Aquca_108_00035.3	Aquca_001_00552.1
	Aquca_030_00015.1	Aquca_019_00187.1	Aquca_003_00195.3	Aquca_007_00844.5	Aquca_007_00844.4
Arabidopsis lyrata	914433	895494	475543	313077	328883
	886966	911635	490604	476726	884826
	490933	918182	320180	478720	892557
	492307	478721	474617
Arabidopsis thaliana	AT4G22010.1	AT1G21850.1	AT1G21860.1	AT1G41830.1	AT1G76160.1
	AT5G66920.1	AT4G12420.2	AT4G12420.1	AT4G28090.1	AT4G38420.1
	AT1G75790.1	AT5G48450.1	AT4G37160.1	AT5G51480.1	AT3G13390.1
	AT1G55570.1	AT2G23630.1	AT3G13400.1	AT4G25240.1	AT1G55560.1
Brachypodium distachyon	Bradi1g26470.1	Bradi1g32470.1	Bradi3g16940.1	Bradi5g18317.1	Bradi1g52200.1
	Bradi3g11540.1	Bradi2g03777.1	Bradi2g53297.1	Bradi2g22000.1	Bradi1g58840.1
Brassica rapa	Bra015781	Bra013582	Bra034943	Bra037137	Bra012117
	Bra025818	Bra036800	Bra008241	Bra018479	Bra000773
	Bra032154	Bra033564	Bra017796	Bra022551	Bra022513
	Bra001503	Bra029171	Bra001504	Bra034679	Bra020700
	Bra011721	Bra002825	Bra013877	Bra039388	Bra038001
	Bra039389	Bra028255	Bra030850	Bra034680
Carica papaya	evm.model.supercontig_87.90	evm.model.supercontig_6.404	evm.model.supercontig_26.234	evm.model.supercontig_29.122	evm.model.supercontig_6.405
	evm.model.supercontig_20.137	evm.model.supercontig_119.3	evm.model.supercontig_3.312	evm.model.supercontig_53.162	evm.TU.contig_43054.1
	evm.model.supercontig_340.9
Capsella rubella	Carubv10004445m	Carubv10020107m	Carubv10008790m	Carubv10010844m	Carubv10000546m
	Carubv10004509m	Carubv10026189m	Carubv10007118m	Carubv10021484m	Carubv10006539m
	Carubv10025315m	Carubv10012235m	Carubv10015454m	Carubv10004433m	Carubv10012595m
	Carubv10016186m	Carubv10026290m	Carubv10026165m
Citrus clementina	Ciclev10014842m	Ciclev10025326m	Ciclev10028140m	Ciclev10014825m	Ciclev10000783m
	Ciclev10019410m	Ciclev10027285m	Ciclev10014680m	Ciclev10018007m	Ciclev10001156m
	Ciclev10033418m	Ciclev10004595m	Ciclev10004913m	Ciclev10033561m
Citrus sinensis	orange1.1g009283m	orange1.1g009242m	orange1.1g009054m	orange1.1g009127m	orange1.1g009149m
	orange1.1g011178m	orange1.1g007735m	orange1.1g012024m	orange1.1g009171m	orange1.1g007633m
	orange1.1g046746m	orange1.1g010700m	orange1.1g009960m	orange1.1g007635m	orange1.1g012225m
	orange1.1g012003m	orange1.1g042677m	orange1.1g015447m	orange1.1g020366m
Cucumis sativus	Cucsa.148590.1	Cucsa.085720.1	Cucsa.099250.1	Cucsa.102200.1	Cucsa.394150.1
	Cucsa.271930.1	Cucsa.112290.1	Cucsa.152590.1	Cucsa.152620.1	Cucsa.152630.1
	Cucsa.302090.1	Cucsa.166260.1	Cucsa.251640.1	Cucsa.366770.1	Cucsa.102200.2
	Cucsa.388290.1	Cucsa.271930.2	Cucsa.152610.1	Cucsa.166260.2	Cucsa.308750.1
Eucalyptus grandis	Eucgr.I01478.1	Eucgr.A01118.1	Eucgr.H01991.1	Eucgr.I00988.3	Eucgr.I00988.2
	Eucgr.I00988.1	Eucgr.F03538.1	Eucgr.F01712.1	Eucgr.F01712.2	Eucgr.D01344.1
	Eucgr.I00990.1	Eucgr.B03581.1	Eucgr.F03538.2	Eucgr.K00156.1	Eucgr.E00461.1
	Eucgr.I01478.2	Eucgr.J01719.1	Eucgr.G02744.1	Eucgr.B03580.1	Eucgr.J01720.1
	Eucgr.H00721.1	Eucgr.J01040.1
Fragaria vesca	mrna23952.1-v1.0-hybrid	mrna08608.1-v1.0-hybrid	mrna17174.1-v1.0-hybrid	mrna32248.1-v1.0-hybrid	mrna19640.1-v1.0-hybrid
	mrna29389.1-v1.0-hybrid	mrna17390.1-v1.0-hybrid	mrna29390.1-v1.0-hybrid	mrna23416.1-v1.0-hybrid	mrna18269.1-v1.0-hybrid
	mrna21247.1-v1.0-hybrid	mrna01568.1-v1.0-hybrid	mrna23418.1-v1.0-hybrid
Glycine max	Glyma06g46350.1	Glyma12g31920.1	Glyma11g06290.3	Glyma11g06290.2	Glyma11g06290.1
	Glyma01g38980.1	Glyma11g10320.1	Glyma12g10420.1	Glyma12g02610.1	Glyma17g01580.1
	Glyma17g38120.1	Glyma04g02140.1	Glyma14g39880.3	Glyma06g02240.1	Glyma14g39880.2
	Glyma14g39880.1	Glyma07g39160.1	Glyma17g21490.1	Glyma17g21530.1	Glyma11g36390.1
	Glyma07g39160.2	Glyma06g47670.1	Glyma04g13670.1	Glyma06g46350.2	Glyma17g14730.1
	Glyma08g45730.1	Glyma20g03030.1	Glyma05g04270.1	Glyma05g17432.1	Glyma07g35170.1
	Glyma20g33460.1	Glyma20g33470.2	Glyma10g34110.2	Glyma09g24590.1	Glyma07g35180.1
	Glyma09g24590.2	Glyma13g09707.1	Glyma11g06290.5	Glyma11g06290.4	Glyma05g17404.1
	Glyma19g07512.1	Glyma15g11570.1
Gossypium raimondii	Gorai.008G038600.1	Gorai.002G202300.1	Gorai.008G189200.1	Gorai.009G179300.1	Gorai.009G189900.1
	Gorai.010G181000.1	Gorai.009G268100.1	Gorai.007G052900.1	Gorai.002G120000.1	Gorai.007G209900.2
	Gorai.007G209900.1	Gorai.008G038600.2	Gorai.009G189900.2	Gorai.008G073000.1	Gorai.008G236600.2
	Gorai.008G236600.1	Gorai.009G268100.2	Gorai.010G181000.2	Gorai.002G202300.2	Gorai.008G038600.4
	Gorai.008G038600.3	Gorai.006G212500.5	Gorai.006G212500.3	Gorai.006G212500.2	Gorai.011G104400.1
	Gorai.001G102100.1	Gorai.001G048300.1	Gorai.006G212500.1	Gorai.009G189900.3	Gorai.006G212500.4
	Gorai.007G052900.2	Gorai.007G209700.1	Gorai.009G194300.1	Gorai.013G245000.2	Gorai.013G245000.1
	Gorai.013G244800.1	Gorai.002G173600.1	Gorai.009G309400.1	Gorai.006G212500.7	Gorai.006G212500.6
	Gorai.006G212500.8	Gorai.009G309500.1	Gorai.013G244900.1	Gorai.004G098200.1	Gorai.004G016000.1
	Gorai.013G244700.1	Gorai.007G052900.3	Gorai.008G038600.5	Gorai.008G038600.6	Gorai.006G269000.1
	Gorai.010G181000.3
Linum usitatissimum	Lus10030045	Lus10035282	Lus10022465	Lus10016770	Lus10020022
	Lus10005649	Lus10015545	Lus10034560	Lus10032241	Lus10021238
	Lus10021832	Lus10028921	Lus10004339	Lus10022648	Lus10024604
	Lus10000837	Lus10019642	Lus10031143	Lus10023977.45.501	Lus10031722
	Lus10025860	Lus10038239	Lus10010338	Lus10038920	Lus10021864
	Lus10027207	Lus10037941	Lus10023539	Lus10036492	Lus10010358
	Lus10010337	Lus10021863	Lus10025107	Lus10040424	Lus10017262
	Lus10003346	Lus10013556
Malus domestica	MDP0000185635	MDP0000150489	MDP0000610961	MDP0000283457	MDP0000306888
	MDP0000221906	MDP0000214159	MDP0000522743	MDP0000133475	MDP0000266398
	MDP0000459304	MDP0000120008	MDP0000436308	MDP0000185799	MDP0000261928
	MDP0000246398	MDP0000226700	MDP0000197717	MDP0000436303	MDP0000261927
	MDP0000313123	MDP0000296578	MDP0000319147	MDP0000279478	MDP0000275020
	MDP0000054764	MDP0000198994	MDP0000258905	MDP0000288520	MDP0000279576
	MDP0000138735
Manihot esculenta	cassava4.1_005161m	cassava4.1_005089m	cassava4.1_004981m	cassava4.1_004947m	cassava4.1_005181m
	cassava4.1_005167m	cassava4.1_024295m	cassava4.1_004151m	cassava4.1_004070m	cassava4.1_021221m
	cassava4.1_031703m	cassava4.1_004165m	cassava4.1_023993m	cassava4.1_004748m	cassava4.1_004139m
	cassava4.1_004463m	cassava4.1_028327m	cassava4.1_027139m	cassava4.1_029605m	cassava4.1_004448m
Medicago truncatula	Medtr4g049390.1	Medtr2g088080.1	Medtr4g132320.1	Medtr5g018270.1	Medtr4g101650.1
	Medtr2g088080.2	Medtr3g008580.1	Medtr4g083190.1	Medtr7g051440.1	Medtr3g083450.1
	Medtr3g083440.1	Medtr3g083390.1	Medtr3g083400.1	Medtr3g083430.1	Medtr3g083410.1
	Medtr4g083210.1
Mimulus guttatus	mgv1a004187m	mgv1a004185m	mgv11b015886m	mgv1a004001m	mgv1a003982m
	mgv1a003271m	mgv1a004238m	mgv1a004264m	mgv1a003515m	mgv1a003381m
	mgv1a003243m	mgv1a004531m	mgv1a019613m	mgv1a003925m	mgv1a003980m
	mgv1a003910m	mgv1a002399m	mgv1a003754m	mgv1a026945m	mgv1a025826m
Oryza sativa	LOC_Os06g46500.1	LOC_Os04g47400.1	LOC_Os07g32660.1	LOC_Os06g01490.1	LOC_Os08g05820.1
	LOC_Os01g01030.1	LOC_Os07g02810.1	LOC_Os01g60080.1	LOC_Os05g40740.3	LOC_Os05g40740.2
	LOC_Os05g40740.1	LOC_Os05g40740.4	LOC_Os10g36390.1.60.303	LOC_Os10g36390.1.60.303	LOC_Os10g36390.1.306.495
	LOC_Os10g36390.1.306.495
Panicum virgatum	Pavirv00030159m	Pavirv00043865m	Pavirv00039677m	Pavirv00007977m	Pavirv00030616m
	Pavirv00037469m	Pavirv00038528m	Pavirv00056216m	Pavirv00061179m	Pavirv00035819m
	Pavirv00060782m	Pavirv00012178m	Pavirv00055525m	Pavirv00050446m	Pavirv00015689m
	Pavirv00052022m	Pavirv00002522m	Pavirv00069222m	Pavirv00062572m	Pavirv00011924m
	Pavirv00039678m	Pavirv00004591m	Pavirv00034598m
Physcomitrella patens	Pp1s217_57V6.1	Pp1s136_116V6.1
Phaseolus vulgaris	Phvul.002G021900.1	Phvul.011G025400.1	Phvul.011G102500.1	Phvul.009G021000.1	Phvul.001G001500.1
	Phvul.003G080100.1	Phvul.003G247700.1	Phvul.003G247800.1	Phvul.001G269100.1	Phvul.003G217800.1
	Phvul.005G008000.1	Phvul.008G134900.1	Phvul.002G101700.1	Phvul.002G101800.1	Phvul.001G269200.1
	Phvul.007G140000.1	Phvul.007G139900.1
Picea abies	MA_10427393g0010	MA_161013g0010	MA_10254g0020	MA_10196428g0010	MA_110832g0010
	MA_10432190g0020	MA_10236360g0010
Populus trichocarpa	Potri.014G154500.1	Potri.004G180500.1	Potri.002G227600.1	Potri.007G038300.2	Potri.007G038300.1
	Potri.004G180500.4	Potri.002G013700.1	Potri.004G010100.1	Potri.005G247700.1	Potri.007G038200.1
	Potri.001G120300.1	Potri.001G120300.3	Potri.003G112700.1	Potri.004G010100.2	Potri.002G021000.1
	Potri.001G000500.1	Potri.014G177700.1	Potri.003G224100.1	Potri.012G126400.1	Potri.001G000600.1
	Potri.015G127200.1	Potri.001G120300.2	Potri.015G127200.2	Potri.001G120300.4	Potri.014G177700.2
	Potri.008G032100.1	Potri.008G032200.1	Potri.003G224200.1	Potri.004G180500.3	Potri.004G180500.2
Prunus persica	ppa003877m	ppa004000m	ppa003872m	ppa003860m	ppa003926m
	ppa003224m	ppa003733m	ppa003976m	ppa003715m	ppa005704m
	ppa003219m	ppa003275m	ppa022550m	ppa021300m
Ricinus communis	30170.m014317	29683.m000473	30010.m000660	29842.m003573	29676.m001645
	28200.m000193	29676.m001647	28842.m000913	30178.m000855	30147.m014212
	28842.m000912	29475.m000236
Setaria italica	Si029411m	Si006181m	Si013462m	Si006118m	Si034997m
	Si034798m	Si034842m	Si019624m	Si029441m	Si000880m
	Si024626m
Selaginella moellendorffii	229918	410532	403803	418427
Sorghum bicolor	Sb02g034420.1	Sb10g027270.1	Sb07g003590.1	Sb10g000470.1	Sb01g017580.1
	Sb01g035180.1	Sb03g037970.1	Sb09g023770.1	Sb06g025300.1	Sb02g001610.1
Thellungiella halophila	Thhalv10018373m	Thhalv10024862m	Thhalv10007361m	Thhalv10003952m	Thhalv10007292m
	Thhalv10024832m	Thhalv10003955m	Thhalv10028533m	Thhalv10018365m	Thhalv10018410m
	Thhalv10013200m	Thhalv10003863m	Thhalv10013035m	Thhalv10024863m	Thhalv10020433m
	Thhalv10011364m	Thhalv10011369m	Thhalv10020444m	Thhalv10024736m	Thhalv10004223m
Vitis vinifera	GSVIVT01023902001	GSVIVT01005054001	GSVIVT01012709001	GSVIVT01030441001	GSVIVT01008707001
	GSVIVT01005055001	GSVIVT01003808001	GSVIVT01001270001	GSVIVT01005373001	GSVIVT01004401001
	GSVIVT01018624001	GSVIVT01016181001
Zea mays	AC177897.2_FGT022

CAZyme Information