| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra008414 |
| Family | CBM43 |
| Protein Properties | Length: 324 Molecular Weight: 33514.1 Isoelectric Point: 4.0936 |
| Chromosome | Chromosome/Scaffold: 02 Start: 15491699 End: 15492670 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 235 | 313 | 9.8e-32 |
| WCVAKPSVPDPIIQEAMNFACGSGADCHSIQPNGACFKPNTLWAHASYAFNSYWQRTKGSGGSCSFGGTGMLVTVDPSK | |||
| Full Sequence |
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| Protein Sequence Length: 324 Download |
| MLEKMMTQLN LAQPLDYSTT SCNTQPNNVS ATLTLSPYVP LAPLSVPENA SPFCVNPPNT 60 PLNSPPSSSY PELSPPPGPI NVPNPAESSS NPNSNPNTPD STSNPNSIPN PPETSSSNPN 120 PPVTVPNPPE SSSNPNPPES SLNPNPPVTV PNPPDISSPN PPETVPSPSV PGYTPGPSGP 180 ISGPPYSEPG PSTPTDTPTP SGNIPTPSSG FLPPIVYPPP MVPPPPSVTP TSAYWCVAKP 240 SVPDPIIQEA MNFACGSGAD CHSIQPNGAC FKPNTLWAHA SYAFNSYWQR TKGSGGSCSF 300 GGTGMLVTVD PSKIFTYIFH YSS* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 5.0e-18 | 235 | 292 | 63 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 9.0e-29 | 235 | 312 | 78 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD30228.1 | 0 | 1 | 313 | 10 | 345 | AC007202_10 T8K14.10 [Arabidopsis thaliana] |
| RefSeq | NP_001117621.1 | 0 | 1 | 312 | 53 | 387 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_178066.2 | 0 | 1 | 312 | 54 | 388 | unknown protein [Arabidopsis thaliana] |
| RefSeq | XP_002312230.1 | 0 | 29 | 312 | 10 | 292 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516415.1 | 1.4013e-45 | 144 | 312 | 82 | 254 | conserved hypothetical protein [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 2e-16 | 235 | 312 | 13 | 90 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EG434912 | 110 | 203 | 312 | 1.99993e-41 |
| EG434934 | 110 | 203 | 312 | 3.00004e-41 |
| EG434933 | 110 | 203 | 312 | 3.00004e-41 |
| EG434910 | 110 | 203 | 312 | 3.00004e-41 |
| EG434920 | 109 | 203 | 311 | 3.00004e-41 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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