| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra008493 |
| Family | GH28 |
| Protein Properties | Length: 391 Molecular Weight: 42206.3 Isoelectric Point: 8.1705 |
| Chromosome | Chromosome/Scaffold: 02 Start: 15955813 End: 15957676 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 46 | 377 | 0 |
| SACNGSSKIGSVYVPAGKVFLLKSLHFTGPCKLKPLIFTIDGEMKAQSDPNKWQKGENGIIPWLIFERVEGLLLSGRGLLDGQGKGWWDIHCRDHPGPNC IWLAPTMMTFSNCRNVILKSLRFRNSAQSHILVMGSQNVHIKDVKIKSPEISPNTDGVHITSSSAVSITHSDFATGDQVHNLSVTYVNCGPGHGVSVGSL GRGGTEVEVEDIRVAHVNFTGTTNGARIKTWPGGTGYVRGIEFFDIRFSNVQNPIIIDQFYGCAPNCVRTEKAVHIEKVKYMKMSGTSRTEVAMKLECSG KNACSNVFMRDIDLSPANGIGSVSSTCSFVQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 391 Download |
| MDLVLIVFVA VLGLPWLSYG ESVMKYGAVG DGISDDTSAL QKAWDSACNG SSKIGSVYVP 60 AGKVFLLKSL HFTGPCKLKP LIFTIDGEMK AQSDPNKWQK GENGIIPWLI FERVEGLLLS 120 GRGLLDGQGK GWWDIHCRDH PGPNCIWLAP TMMTFSNCRN VILKSLRFRN SAQSHILVMG 180 SQNVHIKDVK IKSPEISPNT DGVHITSSSA VSITHSDFAT GDQVHNLSVT YVNCGPGHGV 240 SVGSLGRGGT EVEVEDIRVA HVNFTGTTNG ARIKTWPGGT GYVRGIEFFD IRFSNVQNPI 300 IIDQFYGCAP NCVRTEKAVH IEKVKYMKMS GTSRTEVAMK LECSGKNACS NVFMRDIDLS 360 PANGIGSVSS TCSFVQGSTQ GTIRPSSCIQ * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 3.0e-66 | 22 | 389 | 380 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-74 | 22 | 385 | 373 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 7.0e-76 | 23 | 390 | 380 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 5.0e-77 | 17 | 382 | 376 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 4.0e-83 | 23 | 388 | 375 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD55472.1 | 0 | 24 | 389 | 1 | 381 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
| GenBank | ABK26513.1 | 0 | 22 | 385 | 46 | 420 | unknown [Picea sitchensis] |
| EMBL | CBI15273.1 | 0 | 3 | 386 | 8 | 384 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_178131.1 | 0 | 54 | 389 | 1 | 336 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267182.1 | 0 | 3 | 386 | 8 | 390 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-21 | 121 | 306 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000000003 | 117 | 360 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000003 | 117 | 360 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000000003 | 117 | 360 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000000003 | 117 | 360 | 72 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
