| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra008572 |
| Family | GH28 |
| Protein Properties | Length: 435 Molecular Weight: 46791.8 Isoelectric Point: 8.2779 |
| Chromosome | Chromosome/Scaffold: 10 Start: 12878352 End: 12880712 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 64 | 421 | 0 |
| WEAVCNGFSNKSFLVPLGKTCMLKPLTFAGPCTSSSITFVIRGNIVAPGYTWNVGNFPAWISFDSINGLVVKGGGVKGGGTLDSRGSVWGGSEHAQDKES PTAMHFNNCNGLRMYNLQHLNSPRNHIGLTGSKNISISGLNLTAPGDSPNTDGIDISRCIGVDIRDSVISTGDDCIAINSGSSYINITGLFCGPGHGISV GSLGRNGEFASVEEVRVKNCTLSNTMNGVRIKTYQNGLGYARKISFEDIRMVDSKNPIIIEQNYLNRGKIEEVSFENSNYQNRGGKNRFYKTESGNGRGV KVSDVRYSRIYGSSASDDAVTFNCNADLGCEDIVMDHVDIVSAKAGHAVSASCKNVRG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 435 Download |
| MKKSSLFFVL LCLFQISKLD FCLAGSVHMV NNNGHERHRF ISVTDFGAVC DGKTDDTQAF 60 LKAWEAVCNG FSNKSFLVPL GKTCMLKPLT FAGPCTSSSI TFVIRGNIVA PGYTWNVGNF 120 PAWISFDSIN GLVVKGGGVK GGGTLDSRGS VWGGSEHAQD KESPTAMHFN NCNGLRMYNL 180 QHLNSPRNHI GLTGSKNISI SGLNLTAPGD SPNTDGIDIS RCIGVDIRDS VISTGDDCIA 240 INSGSSYINI TGLFCGPGHG ISVGSLGRNG EFASVEEVRV KNCTLSNTMN GVRIKTYQNG 300 LGYARKISFE DIRMVDSKNP IIIEQNYLNR GKIEEVSFEN SNYQNRGGKN RFYKTESGNG 360 RGVKVSDVRY SRIYGSSASD DAVTFNCNAD LGCEDIVMDH VDIVSAKAGH AVSASCKNVR 420 GSYFSSPVSC IKKH* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-79 | 21 | 423 | 414 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 2.0e-80 | 41 | 418 | 383 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-84 | 39 | 422 | 391 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 5.0e-93 | 41 | 421 | 383 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 3.0e-99 | 42 | 421 | 384 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 0 | 43 | 431 | 32 | 396 | PGN [Glycine max] |
| RefSeq | NP_195292.2 | 0 | 43 | 421 | 26 | 376 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_197222.1 | 0 | 3 | 432 | 2 | 420 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 0 | 17 | 431 | 7 | 394 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 16 | 422 | 6 | 381 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 3e-20 | 142 | 419 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-20 | 142 | 419 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-20 | 142 | 419 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-20 | 142 | 419 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 3e-20 | 142 | 419 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
