| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra008603 |
| Family | GH5 |
| Protein Properties | Length: 525 Molecular Weight: 58693.4 Isoelectric Point: 7.9206 |
| Chromosome | Chromosome/Scaffold: 10 Start: 13016545 End: 13018763 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 34 | 349 | 1.99965e-42 |
| IVDEKGQRVKLACVNWPAHLQPAVAEGLNKQPLDSISKKIVSMGFNCVRLTWPLDLMTNDTLARNVTVKQSFERLNLLDDVLGIQTHNPKILNLPIFNAF QEVVSNLGQNGVMVILDNHLTTPGWCCSDNDLDAFFEYPNFDPVIWTKGLSKMASLFRNVTNVVGMSLRNEPRGTRDYPNLWFKYMPKGGEAVHAASPEV LVILSGIDYDTNLSFLRDRFFNVSFTDKLVFEQHWYSFSDGRDSWVKHNSNDFCAKIIEKVTHNGGFLIGRGFPLFLTEFGANLRSGDVSGNRYMNCLVA WAAENDLDWAVWALTG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 525 Download |
| MTRSISLCLF FFLFISWIPK LITSYPLSTK SRWIVDEKGQ RVKLACVNWP AHLQPAVAEG 60 LNKQPLDSIS KKIVSMGFNC VRLTWPLDLM TNDTLARNVT VKQSFERLNL LDDVLGIQTH 120 NPKILNLPIF NAFQEVVSNL GQNGVMVILD NHLTTPGWCC SDNDLDAFFE YPNFDPVIWT 180 KGLSKMASLF RNVTNVVGMS LRNEPRGTRD YPNLWFKYMP KGGEAVHAAS PEVLVILSGI 240 DYDTNLSFLR DRFFNVSFTD KLVFEQHWYS FSDGRDSWVK HNSNDFCAKI IEKVTHNGGF 300 LIGRGFPLFL TEFGANLRSG DVSGNRYMNC LVAWAAENDL DWAVWALTGD YYLRTGQKHM 360 VETFGVLAPN WKDVANSTYL QKLSGIQLPV RGPGLQSKKL LFHPTTGLCV TSNLSNNSPT 420 LRLEQCRKAE PSTFNPSEGI LWSNKMCVEA PDAVGQKVKL GAGTKCSKLG QTSATHMHLS 480 FKTNNGSLIC LDVDELDNSI VANPCKCLTM DASCDPASQW FKVL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG2730 | BglC | 5.0e-5 | 41 | 363 | 366 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
| pfam00150 | Cellulase | 8.0e-16 | 35 | 350 | 324 | + Cellulase (glycosyl hydrolase family 5). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD31066.1 | 0 | 24 | 524 | 2 | 503 | AC007357_15 F3F19.15 [Arabidopsis thaliana] |
| RefSeq | NP_172772.2 | 0 | 24 | 524 | 32 | 533 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | NP_197172.1 | 0 | 1 | 524 | 1 | 488 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | NP_197252.1 | 0 | 25 | 524 | 26 | 526 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002515055.1 | 0 | 22 | 524 | 29 | 531 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1vrx_B | 0.00000000000003 | 29 | 374 | 8 | 339 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1vrx_A | 0.00000000000003 | 29 | 374 | 8 | 339 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1ece_B | 0.0000000000004 | 29 | 374 | 8 | 339 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| PDB | 1ece_A | 0.0000000000004 | 29 | 374 | 8 | 339 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| PDB | 2zun_C | 0.000002 | 42 | 379 | 61 | 402 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
