y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra008721 |
Family | PL1 |
Protein Properties | Length: 500 Molecular Weight: 56368.4 Isoelectric Point: 7.8831 |
Chromosome | Chromosome/Scaffold: 10 Start: 13570521 End: 13572328 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 210 | 416 | 0 |
IQKEPLWIIFKNDMSIRLSQELLVNSDKTIDARGADVHIAHGAGITMQFVRNVIIHGLHIHHISESNGGMIRDSVDHFGMRTRADGDGLSIYGSSNIWID HVSMSKCQDGLIDAIVGSTAITISNSHFTHHNDVMLLGAQNNMNEADQKMQVTVAYNHFGKGLVQRMPRIRWGFVHVVNNDYTHWELYAIGGSQGPTILS HGNRFIA |
Full Sequence |
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Protein Sequence Length: 500 Download |
MEMARLLKLM CVFCIAGLIP TIKANISELD EYWSQRADEA REFTLQAYHS DPYEIVDHFH 60 ERHYDNSTDD TTTEEHSSNS TDVTATEEDN SNSTDVTATE EDSSTKPEEE GTEVIEMVGN 120 SKNSTRRSLK GKGKGKWSKL KGPCTASNPI DKCWRCRSNW ANRRKKLAKC VRGFGHGTTG 180 GKRGRIYVVT SNLDEDMVNP IPGTLRHAVI QKEPLWIIFK NDMSIRLSQE LLVNSDKTID 240 ARGADVHIAH GAGITMQFVR NVIIHGLHIH HISESNGGMI RDSVDHFGMR TRADGDGLSI 300 YGSSNIWIDH VSMSKCQDGL IDAIVGSTAI TISNSHFTHH NDVMLLGAQN NMNEADQKMQ 360 VTVAYNHFGK GLVQRMPRIR WGFVHVVNND YTHWELYAIG GSQGPTILSH GNRFIAPPHL 420 PYYKEVTKRD YASEDEWKHW TWRSEKDIFM NGAFFRQSGD PHYKSAHTRK QMIKPKNGYA 480 VSKLTKYAGA LDCRVGRRC* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 2.0e-15 | 25 | 64 | 40 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 9.0e-31 | 230 | 490 | 273 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-62 | 229 | 414 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-74 | 222 | 418 | 208 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM60924.1 | 0 | 1 | 499 | 1 | 475 | putative pectate lyase [Arabidopsis thaliana] |
GenBank | ABK28696.1 | 0 | 1 | 499 | 1 | 472 | unknown [Arabidopsis thaliana] |
RefSeq | NP_186776.1 | 0 | 1 | 499 | 1 | 475 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_197015.4 | 0 | 1 | 499 | 1 | 472 | lyase/ pectate lyase [Arabidopsis thaliana] |
Swiss-Prot | Q9LFP5 | 0 | 1 | 499 | 1 | 472 | PEL19_ARATH RecName: Full=Putative pectate lyase 19; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 148 | 491 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 148 | 491 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-18 | 177 | 416 | 20 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000006 | 231 | 414 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000006 | 177 | 414 | 17 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |