| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra008748 |
| Family | GH28 |
| Protein Properties | Length: 440 Molecular Weight: 47147.9 Isoelectric Point: 5.6443 |
| Chromosome | Chromosome/Scaffold: 10 Start: 13684229 End: 13686185 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 69 | 413 | 0 |
| ACKVAASTLLVPSGSTFLVGPVSFLGKECKENIVFQLDGKIIAPTSSSVWGSGLLQWMEFKSLTGITIKGKGVIDGQGSVWWNKSPDYDPADENDMMKDR KGTKMPGTKPTALRFYGSNGVMVNGITIQNSPQTHLKFDNCVNIQVSDFTTSSPGDSPNTDGIHLQNSQDAVIYRSTLACGDDCISIQTGCSNIYIHDVD CGPGHGISIGGLGKENTKACVSNITVRDVTMHETTNGVRIKSWQGGSGSVKQVMFSNIQVSEVANPIVIDQYYCDGGGCHNETSAVAVSNINYINIKGTY TREPVRFACSDSLPCTGISLSTIELKPATDKASSSEPFCWEAHGE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 440 Download |
| MYSLTLKCLA LKLLLLISCD ARHSVYWRGN RRSNAEGGSS GTFNVLDYGA KGDGTSDDTK 60 AFEDAWNEAC KVAASTLLVP SGSTFLVGPV SFLGKECKEN IVFQLDGKII APTSSSVWGS 120 GLLQWMEFKS LTGITIKGKG VIDGQGSVWW NKSPDYDPAD ENDMMKDRKG TKMPGTKPTA 180 LRFYGSNGVM VNGITIQNSP QTHLKFDNCV NIQVSDFTTS SPGDSPNTDG IHLQNSQDAV 240 IYRSTLACGD DCISIQTGCS NIYIHDVDCG PGHGISIGGL GKENTKACVS NITVRDVTMH 300 ETTNGVRIKS WQGGSGSVKQ VMFSNIQVSE VANPIVIDQY YCDGGGCHNE TSAVAVSNIN 360 YINIKGTYTR EPVRFACSDS LPCTGISLST IELKPATDKA SSSEPFCWEA HGELKTETLP 420 PIQCLKTEKS TSQSSNDAC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 9.0e-72 | 39 | 426 | 396 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-73 | 72 | 393 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-74 | 33 | 394 | 369 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 1.0e-81 | 42 | 397 | 361 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 7.0e-99 | 43 | 421 | 383 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD46483.1 | 0 | 1 | 426 | 1 | 426 | polygalacturonase PG1 [Glycine max] |
| GenBank | ACU24545.1 | 0 | 1 | 426 | 1 | 426 | unknown [Glycine max] |
| DDBJ | BAH56488.1 | 0 | 37 | 439 | 95 | 510 | polygalacturonase 1 [Prunus persica] |
| RefSeq | NP_196969.1 | 0 | 1 | 439 | 1 | 435 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002521450.1 | 0 | 18 | 430 | 27 | 458 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-26 | 55 | 341 | 22 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 8e-25 | 72 | 393 | 21 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 8e-25 | 72 | 393 | 21 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 8e-25 | 72 | 393 | 21 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 8e-25 | 72 | 393 | 21 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
