| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra009111 |
| Family | AA1 |
| Protein Properties | Length: 490 Molecular Weight: 54031.6 Isoelectric Point: 9.5454 |
| Chromosome | Chromosome/Scaffold: 10 Start: 15282962 End: 15284713 |
| Description | laccase 12 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA1 | 6 | 475 | 0 |
| NRHGVRQMRTGWADGPEFVTQCPIRPGKSYTYRFTIQGQEGTLWWHAHSSWLRATVYGALIIHPALGSSFPFPKPDSQTALVLGEWWNANPVDVINQATR TGAAPNISDAYTINGQPGDLYNCSNKETVVVPVNSGETSLLRVINAALNQPLFFTVANHKLTVVGADASYLKPFTTKVLMLGPGQTTDVLLTADQPPKRY YIAARAYQSAQNAPFDNTTTTAILHYRNTTKTSPPVTLSLPAFNDTNTVTSFSRKFKSLRNVVVPKTIDENLFFTIGLGLDNCPKNFPKNRCQGLNGTRF TASMNNVSFVLPSNFSLLQAHSNGIPGVFTTDFPAKPPVKFDYTGNNISRGLFQPVKGTKLYKLKYGTRVQIVLQDTNIVTSENHPIHLHGYDFYIVAEG FGNFNPKKDNSKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGVWLMHCHLDVHIKWGLGMAFLVENGVGD | |||
| Full Sequence |
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| Protein Sequence Length: 490 Download |
| MLIKKNRHGV RQMRTGWADG PEFVTQCPIR PGKSYTYRFT IQGQEGTLWW HAHSSWLRAT 60 VYGALIIHPA LGSSFPFPKP DSQTALVLGE WWNANPVDVI NQATRTGAAP NISDAYTING 120 QPGDLYNCSN KETVVVPVNS GETSLLRVIN AALNQPLFFT VANHKLTVVG ADASYLKPFT 180 TKVLMLGPGQ TTDVLLTADQ PPKRYYIAAR AYQSAQNAPF DNTTTTAILH YRNTTKTSPP 240 VTLSLPAFND TNTVTSFSRK FKSLRNVVVP KTIDENLFFT IGLGLDNCPK NFPKNRCQGL 300 NGTRFTASMN NVSFVLPSNF SLLQAHSNGI PGVFTTDFPA KPPVKFDYTG NNISRGLFQP 360 VKGTKLYKLK YGTRVQIVLQ DTNIVTSENH PIHLHGYDFY IVAEGFGNFN PKKDNSKFNL 420 VDPPLRNTVA VPVNGWAVIR FVADNPGVWL MHCHLDVHIK WGLGMAFLVE NGVGDLETLE 480 AAPHDLPVC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07731 | Cu-oxidase_2 | 3.0e-44 | 337 | 473 | 141 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
| PLN02191 | PLN02191 | 4.0e-64 | 8 | 467 | 492 | + L-ascorbate oxidase | ||
| PLN02604 | PLN02604 | 3.0e-73 | 8 | 473 | 500 | + oxidoreductase | ||
| TIGR03388 | ascorbase | 1.0e-81 | 8 | 473 | 510 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
| TIGR03389 | laccase | 0 | 8 | 489 | 486 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK92474.1 | 0 | 8 | 489 | 66 | 550 | unknown [Populus trichocarpa] |
| RefSeq | NP_196158.1 | 0 | 8 | 489 | 84 | 565 | LAC12 (laccase 12); laccase [Arabidopsis thaliana] |
| RefSeq | XP_002312186.1 | 0 | 8 | 489 | 90 | 574 | laccase 90a [Populus trichocarpa] |
| RefSeq | XP_002315131.1 | 0 | 8 | 489 | 91 | 575 | laccase 90c [Populus trichocarpa] |
| RefSeq | XP_002520796.1 | 0 | 8 | 489 | 92 | 577 | laccase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 0 | 8 | 467 | 62 | 521 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1asq_A | 0 | 8 | 467 | 62 | 521 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1asp_B | 0 | 8 | 467 | 62 | 521 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1asp_A | 0 | 8 | 467 | 62 | 521 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1aso_B | 0 | 8 | 467 | 62 | 521 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO797675 | 489 | 8 | 490 | 0 |
| DY297248 | 329 | 133 | 455 | 0 |
| EX274037 | 311 | 167 | 471 | 0 |
| DW243722 | 282 | 175 | 450 | 0 |
| FC900507 | 291 | 133 | 417 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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