| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra009208 |
| Family | AA7 |
| Protein Properties | Length: 569 Molecular Weight: 62049.4 Isoelectric Point: 8.0691 |
| Chromosome | Chromosome/Scaffold: 10 Start: 15644071 End: 15647720 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 146 | 340 | 1.6e-26 |
| IPDVVVFPRSEEEVSKILKSCNKYKVPIVPYGGATSIEGHTLAPKGGVCIDMSLMKRVKALHVEDMDVVVEPGIGWQELNEQLEQYGLFFPLDPGPGATI GGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLIIGSEGTLGVITEVTLRLQKIPQHSVVAVCNFPTVKDAADV | |||
| Full Sequence |
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| Protein Sequence Length: 569 Download |
| MALASLFARS RRTASTFFLR SSRQLHSTPN KNGDVSSISA QKGRRRIWWS RSLVPLAIGA 60 ASAASFAVLS QSYPSISQSS SALDSKGVKV GGKGSTELVV KGEYKEVPKE LVAELKTILQ 120 DNLTTDYDER YFHGKPQNSF HKSVNIPDVV VFPRSEEEVS KILKSCNKYK VPIVPYGGAT 180 SIEGHTLAPK GGVCIDMSLM KRVKALHVED MDVVVEPGIG WQELNEQLEQ YGLFFPLDPG 240 PGATIGGMCA TRCSGSLAVR YGTMRDNVIS LKVVLPNGDV VKTASRARKS AAGYDLTRLI 300 IGSEGTLGVI TEVTLRLQKI PQHSVVAVCN FPTVKDAADV AIATMMSGIQ VSRVELLDEV 360 LIRALNMANG KNLKEVPTLM FEFIGTEAYA REQTQIVQEI ASKHNGSDFV FAEESEAKKE 420 LWKIRKEALW ACYAMAPGHE AMTTDVCVPL SHLGELISRS KKELDASPLL CAVIAHAGDG 480 NFHTCIMFDP NNEEQRKEAE RLNNLMVHSA LSMDGTCTGE HGVGTGKMKY LEKEHGIEAL 540 QTMKKIKKAL DPNDIMNPAK LIPPHVCY* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11230 | PRK11230 | 1.0e-48 | 146 | 567 | 428 | + glycolate oxidase subunit GlcD; Provisional | ||
| pfam02913 | FAD-oxidase_C | 6.0e-70 | 320 | 561 | 247 | + FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold. | ||
| TIGR00387 | glcD | 6.0e-92 | 150 | 560 | 415 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 1.0e-121 | 114 | 564 | 465 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| PLN02805 | PLN02805 | 0 | 11 | 568 | 558 | + D-lactate dehydrogenase [cytochrome] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001142976.1 | 0 | 89 | 567 | 76 | 554 | hypothetical protein LOC100275430 [Zea mays] |
| RefSeq | NP_568170.1 | 0 | 1 | 568 | 1 | 567 | FAD linked oxidase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267321.1 | 0 | 1 | 568 | 1 | 566 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322755.1 | 0 | 90 | 568 | 1 | 480 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524111.1 | 0 | 53 | 568 | 43 | 555 | d-lactate dehydrogenase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3pm9_F | 1.99993e-41 | 110 | 562 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 1.99993e-41 | 110 | 562 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_D | 1.99993e-41 | 110 | 562 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_C | 1.99993e-41 | 110 | 562 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_B | 1.99993e-41 | 110 | 562 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| photorespiration | RXN-969 | EC-1.1.3 | glycolate oxidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX265038 | 323 | 161 | 482 | 0 |
| DY305587 | 298 | 201 | 498 | 0 |
| EX261606 | 339 | 218 | 552 | 0 |
| EX261606 | 50 | 516 | 565 | 0.5 |
| DY305587 | 70 | 497 | 566 | 9.5 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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