| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra009264 |
| Family | CE8 |
| Protein Properties | Length: 338 Molecular Weight: 37314.2 Isoelectric Point: 8.4252 |
| Chromosome | Chromosome/Scaffold: 10 Start: 15880994 End: 15882941 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 44 | 326 | 0 |
| NVNQEGGGDFKTINEAIKSIPIGNTKRVIIKLAPGVYHEKVTVDVGRPFVTLMGKPGAETNLTFDGTASKFGTMESATLIIWAKYFVAANLHVKNTAPMP KAGTQGQALAMRINGDKAAFYNCRFYGFQDTLCDDIGNHFFKDCYIEGTYDFIFGRGASLYLNTQLHAVGDGLRVITAHNRQSENQQNGYSFVHCKITGV GTGIYLGRAWMSHPKVVYAYTEMSSVVNPTGWQENRNRENDKTVFYGEYMCTGPGSHKEKRVAHTQDIDKNEANGFLTLGYIK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 338 Download |
| MNRTPEDKAQ VEAWFKANVQ PYSARRGTLD PVLDAAEASP QIINVNQEGG GDFKTINEAI 60 KSIPIGNTKR VIIKLAPGVY HEKVTVDVGR PFVTLMGKPG AETNLTFDGT ASKFGTMESA 120 TLIIWAKYFV AANLHVKNTA PMPKAGTQGQ ALAMRINGDK AAFYNCRFYG FQDTLCDDIG 180 NHFFKDCYIE GTYDFIFGRG ASLYLNTQLH AVGDGLRVIT AHNRQSENQQ NGYSFVHCKI 240 TGVGTGIYLG RAWMSHPKVV YAYTEMSSVV NPTGWQENRN RENDKTVFYG EYMCTGPGSH 300 KEKRVAHTQD IDKNEANGFL TLGYIKGSLW LLPPPAY* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 1.0e-85 | 31 | 333 | 313 | + probable pectinesterase | ||
| PLN02634 | PLN02634 | 9.0e-89 | 41 | 336 | 305 | + probable pectinesterase | ||
| PLN02432 | PLN02432 | 2.0e-98 | 37 | 331 | 296 | + putative pectinesterase | ||
| PLN02682 | PLN02682 | 6.0e-106 | 49 | 333 | 295 | + pectinesterase family protein | ||
| PLN02665 | PLN02665 | 0 | 5 | 337 | 335 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG52566.1 | 0 | 5 | 336 | 11 | 337 | AC010675_14 putative pectin methylesterase; 8433-9798 [Arabidopsis thaliana] |
| EMBL | CAB87930.1 | 0 | 1 | 336 | 7 | 341 | pectin methyl-esterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_177152.2 | 0 | 5 | 336 | 30 | 360 | PPME1; pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_196359.1 | 0 | 5 | 337 | 29 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_196360.1 | 0 | 5 | 337 | 29 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 8e-39 | 34 | 331 | 1 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 4e-38 | 45 | 331 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 2e-21 | 42 | 209 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 2e-21 | 42 | 209 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 3e-21 | 42 | 209 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CX193362 | 250 | 52 | 301 | 0 |
| EV158776 | 246 | 74 | 319 | 0 |
| GR455191 | 245 | 83 | 327 | 0 |
| GR450849 | 242 | 97 | 338 | 0 |
| EX067282 | 242 | 51 | 292 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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