| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra009265 |
| Family | CE8 |
| Protein Properties | Length: 366 Molecular Weight: 39593.5 Isoelectric Point: 7.0972 |
| Chromosome | Chromosome/Scaffold: 10 Start: 15884249 End: 15885897 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 67 | 350 | 0 |
| ITVDPKGGEFKTLMDAIKSVPAANTKRVIIKIAPGEYREKVTIDRNKPFITLMGDPKAMPVITFDGTAAKYGTVDSASLIILSDYFMAVNIVVKNTAPAP DGKMKGAQALSMRISGNMAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSLYLGTQLHVVGDGIRVITAHAGKSADEKSGYSFVHCKVTG VGEGIYLGRAWMSHPKVVYAYTEMTSVVNPAGWQENKIAAHDKTVFYGEYKCQGEGSQTEKRVPFTQKIDPTVANRFLTLGYIE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 366 Download |
| MGYTNVSILL ALVVVFVTPT VLADDATPIP EAKVQVEQWF EANVAPLPAR KGLDPALVAA 60 EAEPRTITVD PKGGEFKTLM DAIKSVPAAN TKRVIIKIAP GEYREKVTID RNKPFITLMG 120 DPKAMPVITF DGTAAKYGTV DSASLIILSD YFMAVNIVVK NTAPAPDGKM KGAQALSMRI 180 SGNMAAFYNC KFYGFQDTIC DDTGNHFFKD CYVEGTFDFI FGSGTSLYLG TQLHVVGDGI 240 RVITAHAGKS ADEKSGYSFV HCKVTGVGEG IYLGRAWMSH PKVVYAYTEM TSVVNPAGWQ 300 ENKIAAHDKT VFYGEYKCQG EGSQTEKRVP FTQKIDPTVA NRFLTLGYIE GSKWLLPPPA 360 VSASI* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02432 | PLN02432 | 5.0e-85 | 67 | 355 | 290 | + putative pectinesterase | ||
| PLN02304 | PLN02304 | 9.0e-86 | 66 | 357 | 302 | + probable pectinesterase | ||
| PLN02634 | PLN02634 | 2.0e-88 | 65 | 360 | 305 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 1.0e-97 | 65 | 357 | 302 | + pectinesterase family protein | ||
| PLN02665 | PLN02665 | 0 | 1 | 360 | 363 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG52566.1 | 0 | 21 | 361 | 2 | 338 | AC010675_14 putative pectin methylesterase; 8433-9798 [Arabidopsis thaliana] |
| GenBank | AAM65347.1 | 0 | 21 | 361 | 2 | 342 | pectin methyl-esterase-like protein [Arabidopsis thaliana] |
| EMBL | CAB87930.1 | 0 | 21 | 361 | 2 | 342 | pectin methyl-esterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_177152.2 | 0 | 1 | 361 | 1 | 361 | PPME1; pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_568181.1 | 0 | 1 | 361 | 1 | 361 | pectinesterase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 2e-36 | 64 | 355 | 7 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-35 | 74 | 355 | 13 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 1e-19 | 73 | 327 | 15 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 1e-19 | 73 | 327 | 15 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 1e-19 | 73 | 327 | 15 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
