| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra009375 |
| Family | PL1 |
| Protein Properties | Length: 379 Molecular Weight: 42316.8 Isoelectric Point: 10.0237 |
| Chromosome | Chromosome/Scaffold: 10 Start: 16391740 End: 16393054 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 93 | 297 | 0 |
| IKGKKWITFKRNMKINLHKPLLISSFTTLDGRGVSVHISGPACLIVYKATDVIIHGLKIHDCKAHPPSSVMGPDSKIMELGQVDGDAIRLVTAKKVWIDH NTLYDCEDGLLDVTRGSTDVTVSNNWFRNQDKVMLLGHDDGYVRDKDMRVTVVFNHFGPNCNQRMPRVRHGYAHVANNYYQGWTQYAIGGSMSPRVKSES NYFVA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 379 Download |
| MVRFLTIALI PILTILFVAN VLVATELNVM DKCWRPNPHW RKVRNQLARC SVGFAGKMTG 60 NIGKGVTQYK VTDPSDDPLN PKPGTLRYAA TLIKGKKWIT FKRNMKINLH KPLLISSFTT 120 LDGRGVSVHI SGPACLIVYK ATDVIIHGLK IHDCKAHPPS SVMGPDSKIM ELGQVDGDAI 180 RLVTAKKVWI DHNTLYDCED GLLDVTRGST DVTVSNNWFR NQDKVMLLGH DDGYVRDKDM 240 RVTVVFNHFG PNCNQRMPRV RHGYAHVANN YYQGWTQYAI GGSMSPRVKS ESNYFVAPES 300 GRKEITWKKH SQGDKMQWKF YSVNDYMENG ACFGLQKGIG KARPNYGPSQ RFIVADAKTV 360 KELTSSAGAL HCTRNSVC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-25 | 94 | 295 | 222 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 6.0e-56 | 117 | 295 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-72 | 104 | 298 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_196490.1 | 0 | 58 | 308 | 1 | 251 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267384.1 | 0 | 16 | 378 | 8 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 27 | 378 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 27 | 378 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 305 | 2 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 28 | 370 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 28 | 370 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 4e-17 | 113 | 295 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 1e-16 | 137 | 306 | 83 | 257 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmv_A | 1e-16 | 137 | 306 | 83 | 257 | A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 |
