| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra009401 |
| Family | CE8 |
| Protein Properties | Length: 538 Molecular Weight: 58652.2 Isoelectric Point: 7.6618 |
| Chromosome | Chromosome/Scaffold: 10 Start: 16484785 End: 16486789 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 227 | 529 | 0 |
| DVTVCKNGMCRYKTVQDAVNAAPDNYGARKFVIKINEGVYEETVTVPFEKKNVVFIGDGMGKTVITGSLNAGMPGITTYNTATVGVVGDGFMARDITFQN TAGPDTHQAVAFRSDSDFSLLENCEFLGNQDTLYAHGLRQFYKKCRIQGNVDFIFGNSASVFQDCEILIAPRQLNPEKGENNAVTAQGRVDPAQSTGFVF LNCSITGTDEYMKLYKANPKVHKSYLGRPWKDYSRTVFIGCNLEALINSDGWLPWSGDLSLKTLYYGESKNTGPGSDRSKRVPWSSVIPDEHVDMYSVAN FIQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 538 Download |
| MSPILTLLFS LFLFASPSSS SRQHQTPPLT PSAQIRLACN ATRYPDLCVS SLSKPGRVPP 60 SPNPSQIIHS AISVSLENLK TAQTKVKSIL DASVGNLNRT NAAKTCLQLL SYSEHRTNST 120 DQALTRGKIK DARAWMSAAL VYQYDSWSAL KYVNGTKEVA ETMSFLNGLI NVTSNALSMM 180 VSYDNFGDNV ASWAPPATER DGFWDKTSGP KVGAGPSLGF PSGLKEDVTV CKNGMCRYKT 240 VQDAVNAAPD NYGARKFVIK INEGVYEETV TVPFEKKNVV FIGDGMGKTV ITGSLNAGMP 300 GITTYNTATV GVVGDGFMAR DITFQNTAGP DTHQAVAFRS DSDFSLLENC EFLGNQDTLY 360 AHGLRQFYKK CRIQGNVDFI FGNSASVFQD CEILIAPRQL NPEKGENNAV TAQGRVDPAQ 420 STGFVFLNCS ITGTDEYMKL YKANPKVHKS YLGRPWKDYS RTVFIGCNLE ALINSDGWLP 480 WSGDLSLKTL YYGESKNTGP GSDRSKRVPW SSVIPDEHVD MYSVANFIQA EEWAMSG* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02745 | PLN02745 | 8.0e-111 | 25 | 531 | 533 | + Putative pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 8.0e-114 | 28 | 533 | 544 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 1.0e-114 | 26 | 536 | 520 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 1.0e-162 | 227 | 531 | 308 | + Pectinesterase. | ||
| PLN02708 | PLN02708 | 0 | 22 | 534 | 518 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB09534.1 | 0 | 26 | 534 | 58 | 573 | pectin methylesterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_196538.1 | 0 | 26 | 534 | 32 | 547 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_568991.2 | 0 | 33 | 534 | 91 | 598 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002275192.1 | 0 | 30 | 533 | 35 | 539 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002281640.1 | 0 | 21 | 533 | 30 | 550 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 227 | 533 | 8 | 307 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 227 | 536 | 4 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 2e-16 | 238 | 506 | 18 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 2e-16 | 238 | 506 | 18 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 2e-16 | 238 | 506 | 18 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
