| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra009406 |
| Family | CE8 |
| Protein Properties | Length: 641 Molecular Weight: 69985.1 Isoelectric Point: 8.2553 |
| Chromosome | Chromosome/Scaffold: 10 Start: 16505939 End: 16510653 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 324 | 619 | 0 |
| VIVGPYETDNFPTITEAVAAAPNKTLPEDGYFVIYAREGLYEEYIVISNKKRNIMLIGDGINKTIITGNHSFIDGWTTYNSSSFAVVGDRFVAVDVTFRN TAGPEKHQAVAVRNNADGSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNIYARKPMVNQKNAVTAHGRTDPNQKTGISIINCT IGAAPDLAADPNPAMTFLGRPWKPYSRTVYIQSYISDAIQPVGWLEWNGTTGLDTISYGEYDNFGPGANTSKRVQWVGYSLLNLAQAMNFTVYNFT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 641 Download |
| MQTQHFSSSL LFLTLLCLSW ASLISSTQPP TQTPLQPPTQ PPTQPPSKPP SQPPPRPTSQ 60 PPSQPPSQPT SQPPSQPPSQ PPSKPPTQPP SKPPTQSSQQ ANVACKSTPY PKLCRTILSA 120 FKSSPSDPYR YGKFTLKQCL KQARRLSKVI NRFAQRVEKD PKASTPEEVS AVADCGDLAA 180 LSVEYLEAVT DELKSAELMT EALVDRVSSL LGGVVTNQQT CLDGLEDANS AFATVLGSPL 240 GNVTQLYSVS LGLVSNALSR NLKRYKGSKG KIFGGGNKAI REPLETLIKV LRKTCDKSKE 300 CRHDRSLGEL GETSGGSILV REAVIVGPYE TDNFPTITEA VAAAPNKTLP EDGYFVIYAR 360 EGLYEEYIVI SNKKRNIMLI GDGINKTIIT GNHSFIDGWT TYNSSSFAVV GDRFVAVDVT 420 FRNTAGPEKH QAVAVRNNAD GSTFYRCSFE GYQDTLYVHS LRQFYRECDI YGTVDFIFGN 480 AAAVFQNCNI YARKPMVNQK NAVTAHGRTD PNQKTGISII NCTIGAAPDL AADPNPAMTF 540 LGRPWKPYSR TVYIQSYISD AIQPVGWLEW NGTTGLDTIS YGEYDNFGPG ANTSKRVQWV 600 GYSLLNLAQA MNFTVYNFTL GDTWLPQTDI PFYGGLLHTE * 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02416 | PLN02416 | 4.0e-136 | 105 | 636 | 537 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 5.0e-145 | 135 | 636 | 506 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN03043 | PLN03043 | 0 | 102 | 637 | 537 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
| PLN02713 | PLN02713 | 0 | 104 | 637 | 539 | + Probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 324 | 622 | 300 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF19577.1 | 0 | 1 | 640 | 1 | 617 | AC011708_20 putative pectinesterase [Arabidopsis thaliana] |
| DDBJ | BAH20370.1 | 0 | 192 | 640 | 1 | 450 | AT3G10720 [Arabidopsis thaliana] |
| RefSeq | NP_187683.2 | 0 | 1 | 640 | 3 | 619 | pectinesterase, putative [Arabidopsis thaliana] |
| RefSeq | NP_196116.1 | 0 | 1 | 640 | 1 | 624 | pectinesterase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002515774.1 | 0 | 103 | 637 | 34 | 568 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 324 | 636 | 9 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 325 | 636 | 6 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 2e-25 | 334 | 626 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 2e-25 | 334 | 626 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 2e-25 | 334 | 626 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
