| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra009417 |
| Family | GH3 |
| Protein Properties | Length: 795 Molecular Weight: 86278.6 Isoelectric Point: 6.5119 |
| Chromosome | Chromosome/Scaffold: 10 Start: 16546155 End: 16556584 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH3 | 235 | 465 | 0 |
| LVSRLGIPMIYGIDAVHGHNNVYNATIFPHNVGLGATRQRIGAATAVEVRATGIPYTFAPCIAVCRDPRWGRCYESYSEDHKVVEDMTDVILGLQGEPPS NYNHGVPFVGGRDKVAACAKHYVGDGGTTRGVNENNTVTDLHGLLSIHMPAYADAIYKGVSTVMVSYSSWNGEKMHANTELITGYLKGTLRFKGFVISDW QGVDKISSPPHSNYTASVRAAIQAGIDMVMV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 795 Download |
| MVGKIVEVYP RKIIRNEAVI KPGVTYGRQS KLPQQAINSR SQLQDAIYQS PPSWLDDDDV 60 DDAITDENWL DVAKVFSEFA QAIGVLGSVP FGLKGDHAFG TVVIMRDRSV GGEWEAGRWD 120 LPGLVTVGKM SKVVWIVGIL LWMCCVWVCN GQGEYVLYKD PNQKVSDRVV DLLGRMTLEE 180 KIGQMVQIDR SVATINVMRD YFIGSVLSGG GSSPLPQATA QNWVDMINEY QKGALVSRLG 240 IPMIYGIDAV HGHNNVYNAT IFPHNVGLGA TRQRIGAATA VEVRATGIPY TFAPCIAVCR 300 DPRWGRCYES YSEDHKVVED MTDVILGLQG EPPSNYNHGV PFVGGRDKVA ACAKHYVGDG 360 GTTRGVNENN TVTDLHGLLS IHMPAYADAI YKGVSTVMVS YSSWNGEKMH ANTELITGYL 420 KGTLRFKGFV ISDWQGVDKI SSPPHSNYTA SVRAAIQAGI DMVMVPFNFN EFINDLLSLV 480 KSKAIPITRI DDAVSRILLV KFTMGLFENP LADYSFSNEL GSQAHRDLAR EAVRKSLVLL 540 KNGNKTNPML PLPRKASKIL VAGTHADNLG YQCGGWSITW QGLSGNKNTR GTTILGAIQS 600 AVDQSTEVVF SQNPGAEFIK SNNFSYAIIA VGEPPYAETA GDSDKLTMMD PGPAIVTSTC 660 QAVKCVAVVL SGRPLVMEPY VASIEALVAA WLPGTEGQGI TDALFGDHGF SGKLPVTWFR 720 NTEQLPMSYG DSPYDPLFAY GSGLETESVA SIVARSTSAS AASTKPCLVT VLCLFLFPSL 780 SRVFQKMKSY KSLE* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03080 | PLN03080 | 1.0e-34 | 234 | 735 | 562 | + Probable beta-xylosidase; Provisional | ||
| pfam01915 | Glyco_hydro_3_C | 6.0e-44 | 537 | 744 | 229 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| PRK15098 | PRK15098 | 4.0e-73 | 169 | 744 | 647 | + beta-D-glucoside glucohydrolase; Provisional | ||
| pfam00933 | Glyco_hydro_3 | 4.0e-75 | 177 | 498 | 331 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| COG1472 | BglX | 1.0e-80 | 176 | 594 | 434 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC42711.1 | 0 | 226 | 783 | 1 | 568 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_680141.2 | 0 | 134 | 783 | 6 | 665 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | XP_002262992.1 | 0 | 154 | 780 | 24 | 651 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002325849.1 | 0 | 143 | 752 | 3 | 613 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002514453.1 | 0 | 130 | 775 | 1 | 648 | Periplasmic beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1x39_A | 0 | 154 | 748 | 1 | 601 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 1x38_A | 0 | 154 | 748 | 1 | 601 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 1lq2_A | 0 | 154 | 748 | 1 | 601 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| PDB | 1j8v_A | 0 | 154 | 748 | 1 | 601 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| PDB | 1iex_A | 0 | 154 | 748 | 1 | 601 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
| linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| CF652906 | 308 | 291 | 598 | 0 |
| HO784016 | 415 | 217 | 625 | 0 |
| CF651771 | 281 | 291 | 571 | 0 |
| FN998758 | 312 | 217 | 523 | 0 |
| HO784016 | 49 | 155 | 203 | 0.00000006 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
