| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra009423 |
| Family | GH51 |
| Protein Properties | Length: 238 Molecular Weight: 26099.1 Isoelectric Point: 5.9391 |
| Chromosome | Chromosome/Scaffold: 10 Start: 16569265 End: 16570706 |
| Description | alpha-L-arabinofuranosidase 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH51 | 6 | 226 | 0 |
| PHEALDGIEFARGDANSTWGSVRAAMGHPKPFGLKYVAVGNEECGKKYYKGNYLEFYNAIKKAYPDIKIISNCDGSSQPLDHPADYYDFHVYAPAKDLFS MSHKFNNTSRDGPKAFVSEYAAKSETDANKGNLLAALGEAGFLLGLEKNSDVVGMVSYAPLFVNTNDRRWLPDAIVFNSSHLYGTPSYWVQQFFTESSGA TLLSSTMEGNSSYVEASAISF | |||
| Full Sequence |
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| Protein Sequence Length: 238 Download |
| MIKLKPHEAL DGIEFARGDA NSTWGSVRAA MGHPKPFGLK YVAVGNEECG KKYYKGNYLE 60 FYNAIKKAYP DIKIISNCDG SSQPLDHPAD YYDFHVYAPA KDLFSMSHKF NNTSRDGPKA 120 FVSEYAAKSE TDANKGNLLA ALGEAGFLLG LEKNSDVVGM VSYAPLFVNT NDRRWLPDAI 180 VFNSSHLYGT PSYWVQQFFT ESSGATLLSS TMEGNSSYVE ASAISFQSNG SDYIQNL* 240 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 1.0e-7 | 6 | 52 | 52 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 7.0e-16 | 154 | 234 | 89 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 3.0e-18 | 154 | 225 | 72 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD40132.1 | 0 | 7 | 235 | 189 | 421 | AF149413_13 contains similarity to arabinosidase [Arabidopsis thaliana] |
| GenBank | AAK50089.1 | 0 | 7 | 235 | 348 | 575 | AF372949_1 AT3g10740/T7M13_18 [Arabidopsis thaliana] |
| DDBJ | BAD95302.1 | 0 | 7 | 235 | 62 | 289 | putative alpha-L-arabinofuranosidase [Arabidopsis thaliana] |
| RefSeq | NP_187685.1 | 0 | 7 | 235 | 348 | 575 | ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
| RefSeq | NP_197984.2 | 0 | 7 | 235 | 347 | 574 | ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 0.0000006 | 8 | 221 | 133 | 375 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 0.0000006 | 8 | 221 | 133 | 375 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 0.0000006 | 8 | 221 | 133 | 375 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 0.0000006 | 8 | 221 | 133 | 375 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 0.0000006 | 8 | 221 | 133 | 375 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EV040001 | 231 | 7 | 235 | 0 |
| FG558615 | 229 | 7 | 235 | 0 |
| EV023379 | 227 | 11 | 235 | 0 |
| FG563821 | 221 | 7 | 225 | 0 |
| EV024050 | 218 | 10 | 225 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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