| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra009469 |
| Family | PL1 |
| Protein Properties | Length: 525 Molecular Weight: 56908.6 Isoelectric Point: 7.4297 |
| Chromosome | Chromosome/Scaffold: 10 Start: 16813938 End: 16818045 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 170 | 369 | 0 |
| WIVFSGDMGIKLRHELIVGSYKTIDGRGANVQITGHGCLTIQQVSHVIIHNVHVHHCKPSGNTLVASSPTHVVFRGVSDGDGISVSASHHIWVDHCSLGY CSDGLIDVILASTAVTISNNYFHHHDEVMLLGHDDRYTADTGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSANPTINSQGNRYTA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 525 Download |
| MVAHKRFHII QKPSCIWIIW FCLLVSLSRH GRASYSLSSS ASTSTSSFNL SLPHQHPFPE 60 DIVLNVQRKL NDSLHRRNLL TYQQGDGDTT ASAPIPSCIT GNPIDDCWRC DPNWSQNRQR 120 LADCSIGFGQ GTLGGKGGRF YLVTDSSDDD AANPTPGTLR HAVIQPEPLW IVFSGDMGIK 180 LRHELIVGSY KTIDGRGANV QITGHGCLTI QQVSHVIIHN VHVHHCKPSG NTLVASSPTH 240 VVFRGVSDGD GISVSASHHI WVDHCSLGYC SDGLIDVILA STAVTISNNY FHHHDEVMLL 300 GHDDRYTADT GMQVTIAFNH FGEGLVQRMP RCRHGYIHVV NNDFTAWEMY AIGGSANPTI 360 NSQGNRYTAP INPNAKEVTK RVDTNEKHWA KWNWRTDGDV MVNGAFFVPS GDGVSLAYAR 420 ATSLQAKAAG FIDQLTVNAG VFGDPSGRNG QGGGFSGITD GGGTITRGYS KDGPSGGGSD 480 SDGGLFSMIF GSNTNAASAA LRQGHVWSIL FTILLNWYFS NHRR* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 5.0e-25 | 171 | 365 | 207 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-58 | 184 | 367 | 206 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-65 | 176 | 371 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL24172.1 | 0 | 177 | 524 | 1 | 348 | putative pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_196051.2 | 0 | 1 | 524 | 1 | 517 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002268818.1 | 0 | 44 | 498 | 22 | 463 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002316399.1 | 0 | 12 | 445 | 2 | 414 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002534016.1 | 0 | 15 | 492 | 8 | 458 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 102 | 441 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 102 | 441 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-20 | 121 | 367 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 5e-16 | 180 | 387 | 123 | 350 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3krg_A | 0.0000000000002 | 180 | 344 | 118 | 295 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CK243724 | 330 | 54 | 383 | 0 |
| EX097340 | 299 | 1 | 299 | 0 |
| HO778688 | 385 | 59 | 443 | 0 |
| DY286386 | 365 | 53 | 414 | 0 |
| FG606120 | 364 | 57 | 420 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
