CAZyme Information

Basic Information
SpeciesBrassica rapa
Cazyme IDBra009589
FamilyGT4
Protein PropertiesLength: 430 Molecular Weight: 48358.4 Isoelectric Point: 7.5534
ChromosomeChromosome/Scaffold: 10 Start: 17339613 End: 17341557
DescriptionUDP-Glycosyltransferase superfamily protein
View CDS
External Links
NCBI Taxonomy
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GT42013352.5e-32
  ITIVVISRLVYRKGADLLVEVIPEVCRLYPNVRFVVGGDGPKHVRLEEMREKHSLQDRVEMLGAVPHSRVRYVLVTGGIFLNSSLTEAFCIAILEAASCG
  LLTVSTRVGGVLPDDMVVLAEPDPDDMVRAIEKAI
Full Sequence
Protein Sequence     Length: 430     Download
MAEPKLRILM VSDFFFPNFG GVENHIYYLS QCLLNLGHKV VVMTHAYGNR TGVRYMTGGL    60
KVYYVPWRPF TMQNTFPTVY GTLPIVRTIL KRERITVVHG HQAFSTLCHE ALMHARTMGY    120
RVVFTDHSLY GFADVGSIHM NKVLQFTLAD IDQAICVSHT SKENTVLRSG LAPGKVFMIP    180
NAVDTAMFKP ADVRPSSDDV ITIVVISRLV YRKGADLLVE VIPEVCRLYP NVRFVVGGDG    240
PKHVRLEEMR EKHSLQDRVE MLGAVPHSRV RYVLVTGGIF LNSSLTEAFC IAILEAASCG    300
LLTVSTRVGG VLPDDMVVLA EPDPDDMVRA IEKAISILPS INPEEMHNRM TKLYSWQDVA    360
KRTEIVYDRA LKCSNRSLLE RLSRFLSCGA WAGKVFCMVM IIDYLLWRLL QLLQPDDDIE    420
EAPEINFCN* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
COG0438RfaG7.0e-427372386+
pfam08288PIGA5.0e-524513490+
cd03798GT1_wlbH_like6.0e-548370379+
cd03801GT1_YqgM_like5.0e-687367383+
cd03796GT1_PIG-A_like07400399+
Gene Ontology
GO TermDescription
GO:0006506GPI anchor biosynthetic process
GO:0009058biosynthetic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
EMBLCAB72148.1014291435n-acetylglucosaminyl-phosphatidylinositol-like protein [Arabidopsis thaliana]
RefSeqNP_566874.1014291432SETH2; transferase, transferring glycosyl groups [Arabidopsis thaliana]
RefSeqXP_002323038.1074122432predicted protein [Populus trichocarpa]
RefSeqXP_002461824.1054267430hypothetical protein SORBIDRAFT_02g008800 [Sorghum bicolor]
RefSeqXP_002529442.1014291431glycosyltransferase, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB2gek_A0.0000003630621313A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose
PDB2gej_A0.0000003630621313A Chain A, Crystal Structure Of Phosphatidylinositol Mannosyltransferase (Pima) From Mycobacterium Smegmatis In Complex With Gdp-Man
PDB3okp_A0.00000173276334A Chain A, Crystal Structure Of Phosphatidylinositol Mannosyltransferase (Pima) From Mycobacterium Smegmatis In Complex With Gdp-Man
PDB3okc_A0.00000173276334A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' Bound To Gdp (Orthorhombic Crystal Form)
PDB3oka_B0.00000173276334A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form)
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
EE59222821952230
EE5922282132174260
DK46190725712570
DY29594831313130
DK49878724412440
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_004_00305.1Aquca_053_00022.3Aquca_053_00022.2Aquca_053_00022.1
Arabidopsis lyrata860579323188
Arabidopsis thalianaAT5G01220.1AT3G45100.2AT3G45100.1
Brachypodium distachyonBradi1g59860.1Bradi2g02800.1Bradi1g67200.1Bradi1g32610.1
Brassica rapaBra009633Bra005694
Carica papayaevm.model.supercontig_163.3evm.model.supercontig_65.21
Capsella rubellaCarubv10000742mCarubv10019008m
Chlamydomonas reinhardtiiCre01.g038550.t1.3Cre16.g689150.t1.2Cre01.g006800.t1.3
Citrus clementinaCiclev10011473mCiclev10001141mCiclev10001076m
Citrus sinensisorange1.1g022615morange1.1g017114morange1.1g016648morange1.1g009759morange1.1g027511m
Cucumis sativusCucsa.176160.1Cucsa.143020.1
Eucalyptus grandisEucgr.A00516.1Eucgr.J00902.1
Fragaria vescamrna18817.1-v1.0-hybridmrna24819.1-v1.0-hybrid
Glycine maxGlyma03g14200.1Glyma01g27840.1Glyma18g42540.1Glyma07g17680.4Glyma07g17680.3
Glyma07g17680.2Glyma07g17680.1Glyma20g12140.9Glyma20g12140.8Glyma20g12140.7
Glyma20g12140.6Glyma20g12140.5Glyma20g12140.4Glyma20g12140.3Glyma20g12140.2
Glyma20g12140.10Glyma13g25060.1
Gossypium raimondiiGorai.012G112200.2Gorai.012G112200.1Gorai.002G261700.2Gorai.002G261700.6Gorai.002G261700.4
Gorai.002G261700.3Gorai.002G261700.1Gorai.003G143800.9Gorai.003G143800.8Gorai.003G143800.7
Gorai.003G143800.6Gorai.003G143800.5Gorai.003G143800.4Gorai.003G143800.3Gorai.003G143800.2
Gorai.003G143800.10Gorai.003G143800.1
Linum usitatissimumLus10004832Lus10002499Lus10024892Lus10022925
Malus domesticaMDP0000899469MDP0000143617MDP0000297386MDP0000273680MDP0000203472
MDP0000184748MDP0000198677
Manihot esculentacassava4.1_007989mcassava4.1_005643mcassava4.1_032287m
Medicago truncatulaMedtr4g015260.1Medtr7g067340.1
Mimulus guttatusmgv1a004620mmgv1a004551mmgv1a006150mmgv1a006148m
Oryza sativaLOC_Os01g04920.1LOC_Os07g01030.1LOC_Os03g15840.1LOC_Os07g16960.1
Panicum virgatumPavirv00011082mPavirv00023556mPavirv00064963mPavirv00000330mPavirv00022111m
Pavirv00063251mPavirv00030308mPavirv00006595mPavirv00056553mPavirv00006877m
Physcomitrella patensPp1s24_194V6.1Pp1s106_103V6.1
Phaseolus vulgarisPhvul.010G005100.1Phvul.008G106900.1Phvul.005G132400.1Phvul.002G226400.1
Picea abiesMA_158718g0080MA_60607g0010MA_159042g1330MA_159118g0680MA_159090g0090
MA_159042g1140
Populus trichocarpaPotri.016G112600.4Potri.016G112600.3Potri.016G112600.2Potri.016G112600.1Potri.006G097600.3
Potri.006G097600.2Potri.006G097600.1Potri.016G130000.1
Prunus persicappa004263mppa005676mppa018035m
Ricinus communis35899.m00002429969.m00027234675.m00002848584.m00001330418.m000015
32791.m00002229638.m00053127698.m000067
Setaria italicaSi020690mSi001496mSi035897mSi035683m
Selaginella moellendorffii170091406541
Sorghum bicolorSb02g000240.1Sb03g006480.1Sb01g040150.1Sb02g008800.1
Thellungiella halophilaThhalv10013276mThhalv10002532m
Vitis viniferaGSVIVT01033998001GSVIVT01024777001
Volvox carteriVocar20009459mVocar20001320m
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)