| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra009747 |
| Family | GT5 |
| Protein Properties | Length: 652 Molecular Weight: 71650.8 Isoelectric Point: 5.381 |
| Chromosome | Chromosome/Scaffold: 06 Start: 16996408 End: 16999993 |
| Description | Glycogen/starch synthases, ADP-glucose type |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 143 | 641 | 0 |
| LVFVTSEAAPYSKTGGLGDVCGSLPIALAGRGHRVMVISPRYLNGTSADKNYARAKDLGVRVTVHCFGGSQEVSFYHEYRDGVDWVFIDHQSYHRPGNPY GDSKGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKSLFLVNDWHAGLVPILLAAKYRPYGVYKDARSILIIHNLAHQGVEPAATYSNLGLPSEWYGA VGWVFPTWARTHALDTGEAVNVLKGAIVTSDRIITVSQGYAWEITTVEGGYGLQDLLSSRKSVINGITNGINIDEWDPSKDEHIPFHYSLDDYSNKVKCK MALQKELGLPIRPECPMIGFIGRLDYQKGIDLIQTAGPDLMVDDIQFVMLGSGDPKCESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFE PCGLNQLYAMRYGTIPVVHATGGLRDTVENFNPYAEGGAGAGTGWVFSPLSKDSMVSALRLAAATYREYKESWEGLMRRGMSRNYSWENAAVQYEQVFQ | |||
| Full Sequence |
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| Protein Sequence Length: 652 Download |
| MASLQISGGS VRFVAGFNRT GCIRPICSLG FPHSRSRFSI GRPLLLRRAS VSGESETDDI 60 TDAERDVSAS SSASLLGFQL VPPGDQEIIS TNTTKETTHQ EETSDATDES EMADFGVPGN 120 RAVEEGAAEV EYTSVKAEVI NNLVFVTSEA APYSKTGGLG DVCGSLPIAL AGRGHRVMVI 180 SPRYLNGTSA DKNYARAKDL GVRVTVHCFG GSQEVSFYHE YRDGVDWVFI DHQSYHRPGN 240 PYGDSKGAFG DNQFRFTLLC HAACEAPLVL PLGGFTYGEK SLFLVNDWHA GLVPILLAAK 300 YRPYGVYKDA RSILIIHNLA HQGVEPAATY SNLGLPSEWY GAVGWVFPTW ARTHALDTGE 360 AVNVLKGAIV TSDRIITVSQ GYAWEITTVE GGYGLQDLLS SRKSVINGIT NGINIDEWDP 420 SKDEHIPFHY SLDDYSNKVK CKMALQKELG LPIRPECPMI GFIGRLDYQK GIDLIQTAGP 480 DLMVDDIQFV MLGSGDPKCE SWMRSMEETY RDKFRGWVGF NVPISHRITA GCDILLMPSR 540 FEPCGLNQLY AMRYGTIPVV HATGGLRDTV ENFNPYAEGG AGAGTGWVFS PLSKDSMVSA 600 LRLAAATYRE YKESWEGLMR RGMSRNYSWE NAAVQYEQVF QWVFMDPPYI N* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 5.0e-106 | 146 | 641 | 509 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 7.0e-146 | 142 | 643 | 509 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 2.0e-171 | 142 | 641 | 514 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 142 | 642 | 501 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| TIGR02095 | glgA | 0 | 142 | 641 | 501 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF24126.1 | 0 | 84 | 651 | 9 | 575 | AF121673_1 soluble starch synthase [Arabidopsis thaliana] |
| GenBank | ABV25893.1 | 0 | 1 | 651 | 1 | 633 | starch synthase isoform I [Manihot esculenta] |
| RefSeq | NP_197818.1 | 0 | 1 | 651 | 1 | 652 | SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1); starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002277372.1 | 0 | 76 | 651 | 79 | 633 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002321996.1 | 0 | 1 | 651 | 1 | 649 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 142 | 640 | 11 | 508 | A Chain A, Crystal Structure Of Putative Dinucleotide-Binding Oxidoreductase (Np_786167.1) From Lactobacillus Plantarum At 1.60 A Resolution |
| PDB | 3vue_A | 0 | 142 | 640 | 11 | 508 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 142 | 640 | 2 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 1rzv_B | 0 | 142 | 640 | 2 | 472 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzv_A | 0 | 142 | 640 | 2 | 472 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO595058 | 492 | 158 | 649 | 0 |
| HO581986 | 368 | 251 | 617 | 0 |
| GO872237 | 347 | 302 | 648 | 0 |
| GO842198 | 336 | 165 | 500 | 0 |
| HO581986 | 34 | 616 | 649 | 0.000008 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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