| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra010038 |
| Family | GH3 |
| Protein Properties | Length: 773 Molecular Weight: 83477.6 Isoelectric Point: 9.1371 |
| Chromosome | Chromosome/Scaffold: 06 Start: 18787924 End: 18792022 |
| Description | beta-xylosidase 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 81 | 329 | 0 |
| AAVPRLGIGGYEWWSEALHGVSDVGPGAKFGGAFPGATSFPQVITTAASFNQSLWEEIGRVVSDEARAMYNGGVAGLTYWSPNVNILRDPRWGRGQETPG EDPVVAGKYAASYVRGLQGNGAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNAKVSKQDLEDTYNVPFKSCVYEGKVASVMCSYNQVNGKPTCADENLLK NTIRGQWRLNGYIVSDCDSVDVFFNQQHYTKTPEEAAAASIKAGLDLDC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 773 Download |
| MSCNKKSLLF GNKVVVILVF LLCLVHSSES LRPLFACNPA NGLTRTLRFC RVNVPIHVRV 60 QDLIGRLTLQ EKIRLLVNNA AAVPRLGIGG YEWWSEALHG VSDVGPGAKF GGAFPGATSF 120 PQVITTAASF NQSLWEEIGR VVSDEARAMY NGGVAGLTYW SPNVNILRDP RWGRGQETPG 180 EDPVVAGKYA ASYVRGLQGN GAGNRLKVAA CCKHYTAYDL DNWNGVDRFH FNAKVSKQDL 240 EDTYNVPFKS CVYEGKVASV MCSYNQVNGK PTCADENLLK NTIRGQWRLN GYIVSDCDSV 300 DVFFNQQHYT KTPEEAAAAS IKAGLDLDCG PFLAIFTEGA VKKGLLTEYD VNLALANTIT 360 VQMRLGMFDG NLGPYANLGP RDVCTLAHRH LALEAAHQGI VLLKNSGRSL PLSPRRHRTV 420 AVIGPNSDVT ETMIGNYAGK ACTYTTPLQG ISRYARTLHQ AGCAGVACRG NQGFGAAEAA 480 AREADATVLV MGLDQSIEAE TRDRTGLLLP GYQQELVTRV AQASKGPVIL VLMSGGPIDV 540 SFAKNNPRVA AIIWAGYPGQ AGGAAIANII FGAVNPGGKL PMTWYPQDYV AKVPMTIMAM 600 RAYGNYPGRT YRFYKGPVVF PFGFGLSYTT FTHSLAQNPL AQLSVSSKKL NSAIFNSSSN 660 SIKVSHANCG TFPKVPLHVE VSNTGEFDGT HTVFVFAEPP KNGIKGLGVN KQLIAFEKVH 720 VTAGAKRTVQ VDVDACKHLG VVDEYGRRRI PMGEHKLHIG DLKHTILVQP QL* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1472 | BglX | 5.0e-49 | 78 | 451 | 379 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam01915 | Glyco_hydro_3_C | 6.0e-51 | 400 | 630 | 237 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| pfam00933 | Glyco_hydro_3 | 1.0e-61 | 63 | 361 | 305 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| PRK15098 | PRK15098 | 1.0e-62 | 118 | 737 | 669 | + beta-D-glucoside glucohydrolase; Provisional | ||
| PLN03080 | PLN03080 | 0 | 27 | 769 | 765 | + Probable beta-xylosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAS17751.2 | 0 | 4 | 769 | 7 | 764 | beta xylosidase [Fragaria x ananassa] |
| DDBJ | BAG28345.1 | 0 | 29 | 751 | 23 | 743 | arabinofuranosidase [Citrus unshiu] |
| RefSeq | NP_199747.1 | 0 | 1 | 772 | 1 | 774 | BXL1 (BETA-XYLOSIDASE 1); hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | XP_002316021.1 | 0 | 26 | 772 | 20 | 763 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519194.1 | 0 | 26 | 772 | 34 | 777 | Periplasmic beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3u48_B | 0 | 118 | 733 | 91 | 696 | A Chain A, Crystal Structure Of Putative Dinucleotide-Binding Oxidoreductase (Np_786167.1) From Lactobacillus Plantarum At 1.60 A Resolution |
| PDB | 3u48_A | 0 | 118 | 733 | 91 | 696 | A Chain A, Crystal Structure Of Putative Dinucleotide-Binding Oxidoreductase (Np_786167.1) From Lactobacillus Plantarum At 1.60 A Resolution |
| PDB | 3u4a_B | 0 | 118 | 733 | 91 | 696 | A Chain A, Crystal Structure Of Putative Dinucleotide-Binding Oxidoreductase (Np_786167.1) From Lactobacillus Plantarum At 1.60 A Resolution |
| PDB | 3u4a_A | 0 | 118 | 733 | 91 | 696 | A Chain A, Crystal Structure Of Putative Dinucleotide-Binding Oxidoreductase (Np_786167.1) From Lactobacillus Plantarum At 1.60 A Resolution |
| PDB | 2x41_A | 2e-39 | 59 | 634 | 3 | 606 | A Chain A, Crystal Structure Of Putative Dinucleotide-Binding Oxidoreductase (Np_786167.1) From Lactobacillus Plantarum At 1.60 A Resolution |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
